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## Rough ideas, need vetting.
- reference CTMC
- [Solving the Forecast Combination Puzzle](https://arxiv.org/pdf/2308.05263.pdf) via log-linear Hyvaarinen stacking (locking).
- Quality of sp…
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Hi!
We built a graph using 30 samples and mapping the other 1000 samples to the graph using `VG Giraffe`. I think `VG Augment` could add some of the variation from these 1,000 samples to the graph. …
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### Description:
Receiving the following error when using an environment variable which is a string of a string array (JSON array string)
Possibly related:
- #1120
- #1292
```
un…
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I'm trying to construct and index a whole genome variation graph of a relatively small genome containing ~17200 short regions. I constructed variation graphs for each region separately. I also generat…
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The numbers and figures reported by Safari are incorrect. The numbers reported are at least a factor 10 smaller when compared to Firefox/Chrome/Edge, and running speedtest under the developer tools sh…
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## 🐛 Bug
In FSDP backward pass, if we accumulate some callbacks and invoke them later in one batch, then different runs can result in slightly different computation graphs and cause recompilation.
…
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### Component(s)
router
### Component version
0.110.1
### wgc version
0.64.1
### controlplane version
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### router version
0.110.1
### What happened?
## Description
In the new version Ba…
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Hi, does the VG tool have any support for Apache Spark? I would like to make a variation graph using the tool and then be able to export the graph to use with Apache Spark. If no support is currently …
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Implement a method of summarizing the variation inside of a graph.
* Drop out small, uncorrelated variation as noise while preserving correlated variation and building them into haplotype blocks.
…
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Hi,
Thank you for developing a useful tool to merge SVs from sequencing datasets.
Currently, I am using HiFi data to call SVs using different callers: sniffles, cuteSV, pbsv, and svim for the Hi…