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starskyzheng
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panpop
Application of pan-genome for population
MIT License
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The result of running PART.pl alone is empty
#66
JiaB-He
opened
3 days ago
4
long_caller_parser.pl会删除几乎所有的DEL？
#65
hui-liu
opened
1 week ago
4
Error in using realign_gen_mask.pl
#64
ChuanzhengWei
closed
1 month ago
1
Error about long_caller_parser.pl
#63
ChuanzhengWei
closed
1 month ago
3
fix split_chr=False
#62
starskyzheng
closed
1 month ago
0
分型结果中的等位基因数量大于2
#61
quanc1989
closed
1 month ago
6
希望保留Sv最后合并文件的info信息 例如svtype等
#60
C-YONG
closed
1 week ago
5
处理二代数据报错
#59
C-YONG
closed
2 months ago
1
运行FILL_DP和PART之后的得到的结果解释
#58
hanshenglei
closed
2 days ago
7
cal_aug_dp未输出{sample}.depth.txt.gz
#57
quanc1989
closed
2 months ago
1
运行老是卡掉
#56
C-YONG
closed
2 months ago
4
TGS流程是否适用于lsf集群系统
#55
jwli-code
opened
2 months ago
4
TGS流程磁盘储存资源占用过大
#54
jwli-code
closed
2 months ago
3
新开发的软件的SV的合并
#53
Yangzhen-Li
closed
1 month ago
1
程序卡在pbsv检测sv的环节
#52
cheninouc
closed
2 months ago
1
使用PART模块后如何计算准确率和召回率？
#51
zhengluo-lz
closed
3 weeks ago
5
About panpop merge syri results
#50
HW-Superior
closed
3 weeks ago
3
群体多个个体vcf合并
#49
liweirfI
closed
3 weeks ago
5
我想知道Fill_DP.pl的用处
#48
hanshenglei
closed
2 months ago
15
A significant amount of variant loci information on some chromosomes is missing after merging
#47
polchan
closed
2 months ago
5
bcftools error
#46
Flooooooooooooower
closed
2 months ago
2
realign.pl: add check of ALT format
#45
starskyzheng
closed
2 months ago
0
Snakefile_TGS运行报错
#44
JingChunSun
closed
4 weeks ago
17
How does Panpop software process samples in parallel?
#43
JunlyMa
closed
1 month ago
5
YAML Error: Expected separator '---' #40
#42
zwj426
closed
1 month ago
13
nucmer
#41
pengyan19
closed
3 months ago
6
I have two type reads, HIFI reads and CLR reads, how to use them for SV calling.
#40
kmosi0
closed
3 months ago
1
Update PART_run.pl
#39
starskyzheng
closed
2 months ago
0
No output result, and keeps showing "Nothing to be done Building DAG of jobs..."
#38
fcbayern31
closed
3 months ago
4
Error: cannot write to /tmp/bcftools.OL73yV/00024.bcf
#37
polchan
closed
3 months ago
10
A question about PART_run.pl
#36
rain-zjg
closed
1 month ago
8
Starskyzheng patch 1
#35
starskyzheng
closed
3 months ago
0
程序一直卡在building dag of jobs
#34
YuanCao1996
closed
1 month ago
9
Could this pipeline run with assembled genome file only? without the reads file.
#33
kmosi0
closed
3 months ago
2
snakemake -j 3 --reason --printshellcmds -s Snakefile_NGS ；Error in rule cal_avg_depth_aug2:
#32
goodcqzz
closed
3 months ago
1
realign.py
#31
pengyan19
closed
3 months ago
17
KeyError in Snakefile_TGS , line 23
#30
sd880131
closed
3 months ago
1
PART合并个体SV
#29
HaoWangLYL
closed
3 months ago
1
基于图形基因组的VCF合并
#28
HaoWangLYL
closed
4 months ago
4
NGS最终的结果文件
#27
cheninouc
closed
3 months ago
1
Question about final VCF for SV. Types.
#26
leone93
closed
3 months ago
1
About PART stand alone
#25
JiadongZHONG
closed
4 months ago
2
Update mergeSV3.py
#24
starskyzheng
closed
4 months ago
0
Update realign_gen_mask.pl
#23
starskyzheng
closed
4 months ago
0
Keyerror in file Snakefile_TGS, line 23
#22
MonsterLaplace
closed
4 months ago
1
Keyerror in file Snakefile_TGS, line 23
#21
MonsterLaplace
closed
4 months ago
0
NGS数据 群体水平的SV检测，能否使用单一基因组作为reference？
#20
bijinpeng
closed
4 months ago
1
vg [warning]
#19
cheninouc
closed
5 months ago
1
Command that merging outcomes of multiple SV callers
#18
lovelycatZ
closed
4 months ago
25
svim2 and already prepared vcf
#17
leone93
closed
5 months ago
2
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