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I don't know why tximeta doesn't recognize my transcriptome. I use the latest version for all the tools/data:
* tximeta 1.6.1
* Salmon 1.3.0 (decoy aware index was created with https://combine-lab…
matmu updated
4 years ago
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Hi @csoneson,
Would you happen to know why I am receiving the following error message?
Thank you!
Best,
Pavan
---------------------------
# Versions:
R - 4.0
alevinQC - 1.4.0
salmon -…
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**Describe the issue**
Hi,
This issue is more specifically about bustools.(if this is wrong repo for this, happy to move the issue to another, this one seems the most active) I've been using kallis…
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Hi
I have a suggestion - [salmon/v1.0](https://github.com/COMBINE-lab/salmon/releases/tag/v1.0.0) was released couple of days back.
There are many enhancements with this version of salmon and …
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https://mp.weixin.qq.com/s/EfItAB6yHmsyPr_XrKcxEA
ixxmu updated
3 years ago
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I've got some SMART-seq2 data that's been demultiplexed, so hundreds of small Fastq files. So, I was wondering:
- Does Salmon have a way to take multiple samples / libraries on a single run and pe…
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Hi,
I'm sorry because I think my question is very very naive...
I got an error while running velocyto:
logging.debug(f"Example of barcode: {valid_bcs_list[0]} and cell_id: {valid_cellid_list[0]…
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Right now, we can't exrcise shell chunks, or chunks without a language specification. It would be handy for our alevin material if we could do that.
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the rule currently works only for the binary that I received directly from the developers
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As far as I could figure out this happens after job completion and I saw some wired symbols on the stdout of this tool (Alevin). This happens only with 20.05 not with 19.09.
```
Traceback (most re…