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csoneson
/
alevinQC
Create QC and summary reports for Alevin output
https://csoneson.github.io/alevinQC/
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error in alevin-fry summary
#32
changostraw
closed
6 months ago
1
is it possible to make alevinQC compatible with the simpleaf output?
#31
crazyhottommy
closed
7 months ago
1
readAlevinFryQC() metadata/explanation
#30
BiotechPedro
closed
1 year ago
5
Add simpleaf
#29
csoneson
closed
1 year ago
4
feat: Add simpleafQCReport function and support for piscem mapper
#28
DongzeHE
closed
1 year ago
1
Compatibility with `simpleaf` output
#27
hiraksarkar
closed
1 year ago
2
nbrMappedUMI for barcode collapsing question
#26
me-orlov
closed
1 year ago
2
alevinQC doesn't seem to work with salmon v1.9.0
#25
gringer
closed
1 year ago
7
Missing allfreq
#24
csoneson
closed
2 years ago
0
Fry support
#23
csoneson
closed
2 years ago
0
alevin-fry support
#22
csoneson
closed
2 years ago
1
Report for 10X feature barcoding
#21
ashuchawla
opened
3 years ago
4
Fix pandoc check
#20
csoneson
closed
3 years ago
1
suggestion to update ignorePandoc argument
#19
LisaHagenau
closed
3 years ago
4
Dedupplot
#18
csoneson
closed
4 years ago
0
Input directory not compatible with Salmon v0.14 or newer (without external whitelist), the following required file(s) are missing or malformed:
#17
PavanKhosla
closed
4 years ago
2
Addinfo
#16
csoneson
closed
4 years ago
0
Gh actions
#15
csoneson
closed
4 years ago
0
Missing input files for alevinQC
#14
vswarup
closed
4 years ago
2
what is the definition of "cell barcode collapsing" in elvinQC R package
#13
yueli8
closed
4 years ago
2
Extbarcodes
#12
csoneson
closed
4 years ago
0
Error in read.table(file = file,...) : more columns than column names
#11
PietroD
closed
4 years ago
10
Question: creating QC report for specific barcodes
#10
Evanleen
closed
4 years ago
10
Report lacks fonts?
#9
apeltzer
closed
4 years ago
6
All alevin flags needed to run alevinQC?
#8
jdrnevich
closed
4 years ago
11
number of CB in whitelist does not match output files
#7
Ryan-Zhu
closed
5 years ago
6
Updateformat
#6
csoneson
closed
5 years ago
0
Release and upload to bioconda
#5
Acribbs
closed
5 years ago
2
Trouble installing from Github: 'alevinQC' requires R>= 3.6
#4
jaclyn-taroni
closed
5 years ago
2
outputDir problem and fix
#3
cansavvy
closed
5 years ago
2
installation error
#2
crazyhottommy
closed
5 years ago
2
Shiny
#1
csoneson
closed
5 years ago
1