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To reduce the number of conda binaries per Python package, the recipes are built using an older version of numpy that is forwards compatible (https://github.com/ContinuumIO/anaconda-issues/issues/6678…
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can you help clarify the best method for normalization.
I have two samples with relatively similar sequencing reads. however the actual valid pairs used is drastically different.
would it be bet…
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During my review of the wrappers to improve documentation of the Galaxy version, I noted a few suggestions that could be implemented in the future:
- Build a wrapper for hicQC in order to pass it m…
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I suspect that `reorderChromosomes` generates bins of negative length. I have noticed this issue when running `hicPlotDistVsCounts` on the matrices where their chromosomes have been reordered at `hicA…
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Hi,
I saw that travis is skipping all pdf comparison in HiCExplorer.
I found the solution to make them evaluated (add ghostscript to the travis conda environment):
https://github.com/deeptools/pyGe…
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**Description of bug:**
MultiQC breaks while running on HiCPro v2.10.0
**MultiQC Error log:**
```
[INFO ] multiqc : This is MultiQC v1.7
[INFO ] multiqc : Template : def…
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Hi,
I have a wrapper which takes a collection with potential a few thousand elements as an input. I get now the error that the file names are extended to the point you a) can't read it anymore and …
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Hi,
I am making great use of this tool but am having trouble with plotting a scale bar on the HiC matrix generated via hicPlotTADs.
My figure looks the same as one of your test images at: https:…
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I have the the hic file downloadable[ **here**](https://s3-ap-northeast-1.amazonaws.com/stemrim-pub/ewijaya/discuss/test.hic) (1.2Gb).
What I did is to convert this file into .cool format and then …
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Hi, I'm a little confused by the values in the .bw files produced by hicPCA.
I'm using hicPCA to compute A/B compartment for two whole genome hic matrix with all default settings. I noticed that for…