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Most papers list a species as a MeSH descriptor, but you need the qualifier to know what the study is actually about (and if its a major topic). Compare these MeSH terms for pmid [25730202](http://ww…
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Schramm, C. A., Sheng, Z., Zhang, Z., Mascola, J. R., Kwong, P. D., & Shapiro, L. (2016). SONAR: A High-Throughput Pipeline for Inferring Antibody Ontogenies from Longitudinal Sequencing of B Cell Tra…
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Add the [cutadapt](https://cutadapt.readthedocs.io) tool to the pipeline.
> Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-t…
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High-throughput sequencing methods for characterizing e.g., soil microbial communities generate data matrices of 'sites' (or samples) as rows, and operational taxonomic units (OTUs) as columns. Values…
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Some plan/objective specification terms are required to be added to OBI by MGED ontology \(MO\) group. These are experimental design types in MGED ontology and generally used in MAGE-TAB files by tran…
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It looks like @vdauwera's much needed and appreciated revamp of the tool documentation had an unintended side effect. Now when I run any Picard tool at the command line the usage prints out with a lo…
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Talking with folks over at NOAA- sounds like UW Genome has X-10 and we should be doing overlapping read libraries with this machine. This coupled with what we have, and likely PacBio, might get us whe…
sr320 updated
7 years ago
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Hi,
We need an OBI term for Chromatin immunoprecipitation (ChIP, not ChIP-chip or ChIP-seq etc). The existing immunoprecipitation OBI term is not suitable and the high throughput assays are outside…
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I tried to search for a couple of GSE accession # (GSE2436, GSE90531, GSE77323, GSE64092) None of these GSE are on stargeo yet. All these GSE I tried to search for are mouse data. Please add the mouse…
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I'm trying to get new terms to describe some of the data in the FaceBase resource (this project is funded by NIH/NIDCR, website at facebase.org).
1. Suggested term name: Chromatin modifier-associat…