vegandevs vegan issues - Githubissues

vegandevs / vegan

R package for community ecologists: popular ordination methods, ecological null models & diversity analysis

https://vegandevs.github.io/vegan/

GNU General Public License v2.0

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issues

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Someone knows if decostand renormalizes the data after the translation with the pseudocounts?

#668 fabih1996 closed 22 hours ago
2
Fix to na.rm in decostand methods alr/clr

#667 antagomir opened 2 days ago
1
technical question using envfit with ordinate phyloseq function!

#665 cabraham03 closed 1 week ago
0
Adding `pca` and `ca` (wish of #655) breaks two packages in reverse dependencies tests

#664 jarioksa opened 1 week ago
7
CLR did not use na.rm

#663 TuomasBorman closed 1 week ago
4
Related to #655 should the wrappers allow partial unconstrained ordination via formula and `Condition()`?

#662 gavinsimpson opened 1 week ago
4
CLR: na.rm is not working

#661 TuomasBorman opened 3 weeks ago
4
vegdist() in disagreement with designdist()

#660 aloboa closed 3 weeks ago
2
cex vegan::ordiplot not respected by plot.(d)c(c)a

#656 BertvanderVeen closed 4 weeks ago
1
Suggestion : Add functions for PCA and CA that just call `rda()` and `cca()` in the background

#655 cmartin closed 2 weeks ago
12
Running rarecurve() crashes vscode in querying par()

#654 maartenciers closed 1 month ago
8
Protection error in do_wcentre

#653 jarioksa closed 1 month ago
2
Update gh action

#652 olivroy closed 1 month ago
0
Link to R-universe + use development mode in pkgdown

#651 olivroy closed 1 month ago
0
Permanova (vegan::adonis2) with two factors but one factor is significant for vegan::betadisper

#649 freixas84 closed 1 month ago
0
Add website to DESCRIPTION + move and tweak news to be pkgdown friendly.

#648 olivroy closed 1 month ago
5
CRAN breaking monitor

#647 jarioksa opened 1 month ago
0
vegan release candidate breaks isopam

#643 jarioksa closed 1 month ago
1
Error from vegan::cca after updating to R 4.4: "crossprod" is not a BUILTIN function

#642 sjgordon1 closed 2 months ago
0
Extracting coefficients

#640 momsane closed 1 month ago
2
Interpretation of species vectors in nMDS

#638 friendly closed 2 months ago
1
Misleading summary in capscale (db-RDA)?

#636 fvlampe closed 2 months ago
4
Please see issue #631

#635 jarioksa closed 3 months ago
0
dbrda function does not let pseudocount through

#631 TuomasBorman closed 3 months ago
3
Why does PROTEST report high significance when PROCRUSTES residuals are high?

#630 NJOram closed 3 months ago
0
Random effects / dbrda with unifrac distances ?

#626 ladrub closed 3 months ago
1
Identifying significance for each level of a factor with envfit

#625 hkaspersen closed 3 months ago
0
"betadisper" _Negative values_ add=lingoes

#624 QianxinJiang closed 3 months ago
8
Vegan for webR / wasm

#623 isbool closed 3 months ago
26
vif.cca Error in qr.X(Q)

#622 powerfulDie closed 3 months ago
0
likely error in CLR formula in decostand docs

#621 handibles opened 4 months ago
5
Functions `ordirgl` and `ordiplot3d` no longer seem to be in the package

#620 aghaynes closed 3 months ago
3
Matrix completion for robust CLR in decostand

#619 antagomir opened 4 months ago
6
Function 'nullmodel' does not recognize most methods anymore

#618 fmassol closed 3 months ago
1
Accessing NMDS points in metaMDS class object, with associated site names!

#616 gabrieltedone closed 5 months ago
1
CCA/RDA row name order matters

#615 TJrogers86 closed 5 months ago
2
Need help for understand the "alias" variables

#612 eggxo closed 6 months ago
0
envfit question

#611 jspychalla closed 6 months ago
1
Error in if (R2.adds[best] > R2.previous && (!R2scope || R2scope && R2.adds[best] <= : missing value where TRUE/FALSE needed

#610 eggxo closed 7 months ago
4
Trying to write a short loop using 'd' function to estimate qD for q = 0,1 and 2

#609 Willowtree72 closed 7 months ago
2
Error message using vegan and "shannon" index

#608 Willowtree72 closed 7 months ago
6
Which dissimilarity index to use

#607 fabib1209 closed 3 months ago
0
betadisper calculate distance between samples and the centroid of a different group.

#606 joshgsmith opened 8 months ago
3
vegan::vegist and vegan::metaMDS don't produce equivalent results

#605 befriendabacterium closed 8 months ago
7
Clarification of strata argument for adoinis2

#603 cazzlewazzle89 closed 8 months ago
0
Scaling of Canonical Coefficients in prc() using pyrifos data set

#602 Hansam closed 2 months ago
3
RDA analyses whether structural variation is used in relation to environmental studies

#601 ld9866 closed 1 month ago
0
how to set the parameter of strata in adonis2

#599 Ivy-ops closed 9 months ago
0
number of rda axes

#598 aguilart closed 3 weeks ago
4
Different results when inputting bray curtis distance matrix vs community data matrix with method = bray

#597 Rob-murphys closed 9 months ago
3