vegandevs vegan issues - Githubissues

vegandevs / vegan

R package for community ecologists: popular ordination methods, ecological null models & diversity analysis

https://vegandevs.github.io/vegan/

GNU General Public License v2.0

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issues

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envfit() Error in object$weights

#713 AlexaBennett closed 1 week ago
8
Getting different p values for main effects alone than when in a complex model

#710 mwhite942 closed 2 weeks ago
0
Non-community data for RDA analysis and Variance Partitioning Analysis

#706 SuperCC18 closed 2 weeks ago
0
PERMANOVA effect size for each factor with adonis2

#705 siobhanschenk closed 2 weeks ago
0
calculating R2 from anova.cca output (as a way to estimate effect size of terms)

#704 aguilart closed 2 weeks ago
0
Error in ordConstrained(X, Y, Z, arg = scale, method = "rda") : dependent data and constraints must have the same number of rows

#703 Coral4 opened 4 weeks ago
1
vegan package citation

#702 UniAlberta closed 3 weeks ago
2
Fix anova.cca

#701 TuomasBorman closed 1 month ago
3
Multiple issues(?) of adonis2 for PERMANOVA and possibility for upgrading the function

#699 menarest closed 1 month ago
3
Evaluate the variance explanation of Bray-Curtis distance from one abundance matrix to another abundance matrix ?

#697 ChaoXianSen closed 1 month ago
0
Extracting coefficients _ adonis

#695 BenStenuit closed 1 month ago
0
Unable to successfully perform Permanova analysis using the latest version 2.6-8

#693 jieyin2023 closed 1 month ago
0
Problem with diversity in vegan package

#692 Fra170197 closed 1 month ago
3
is it possible to set two factors as strata?

#688 Biofarmer closed 2 months ago
0
Do order of RDA axes correspond to explained variance of explanatory variables?

#686 aguilart closed 2 months ago
0
Regression in ordiplot(<rda-class>, scaling=1)

#685 jarioksa closed 1 day ago
11
Add a message that prints during fitting if terms are aliased

#682 gavinsimpson closed 3 months ago
9
Change default test from sequential to omnibus in `adonis2()` Issue 677

#681 gavinsimpson closed 3 months ago
3
pairwise PERMDISP no F values

#679 bark9299 closed 3 months ago
3
Consider changing the default to `by = NULL` or `by = "margin"` in `adonis2()`

#677 gavinsimpson closed 3 months ago
2
plot.cca with optimize=TRUE and ordipointlabel in pipe

#674 jarioksa closed 3 months ago
0
Absolute counts or relative abundance for BC distance matrix

#672 MonicaSteffi closed 3 months ago
0
Error with ordistep(dbrda) vegan package

#670 ParideBalzani closed 3 months ago
3
Someone knows if decostand renormalizes the data after the translation with the pseudocounts?

#668 fabih1996 closed 4 months ago
2
Fix to na.rm in decostand methods alr/clr

#667 antagomir opened 4 months ago
3
technical question using envfit with ordinate phyloseq function!

#665 cabraham03 closed 4 months ago
0
Adding `pca` and `ca` (wish of #655) breaks two packages in reverse dependencies tests

#664 jarioksa opened 5 months ago
9
CLR did not use na.rm

#663 TuomasBorman closed 5 months ago
4
Related to #655 should the wrappers allow partial unconstrained ordination via formula and `Condition()`?

#662 gavinsimpson closed 1 day ago
5
CLR: na.rm is not working

#661 TuomasBorman opened 5 months ago
4
vegdist() in disagreement with designdist()

#660 aloboa closed 5 months ago
2
cex vegan::ordiplot not respected by plot.(d)c(c)a

#656 BertvanderVeen closed 5 months ago
1
Suggestion : Add functions for PCA and CA that just call `rda()` and `cca()` in the background

#655 cmartin closed 5 months ago
18
Running rarecurve() crashes vscode in querying par()

#654 maartenciers closed 5 months ago
8
Protection error in do_wcentre

#653 jarioksa closed 6 months ago
2
Update gh action

#652 olivroy closed 6 months ago
0
Link to R-universe + use development mode in pkgdown

#651 olivroy closed 6 months ago
0
Permanova (vegan::adonis2) with two factors but one factor is significant for vegan::betadisper

#649 freixas84 closed 6 months ago
0
Add website to DESCRIPTION + move and tweak news to be pkgdown friendly.

#648 olivroy closed 6 months ago
5
CRAN breaking monitor

#647 jarioksa opened 6 months ago
0
vegan release candidate breaks isopam

#643 jarioksa closed 6 months ago
1
Error from vegan::cca after updating to R 4.4: "crossprod" is not a BUILTIN function

#642 sjgordon1 closed 6 months ago
0
Extracting coefficients

#640 momsane closed 6 months ago
2
Interpretation of species vectors in nMDS

#638 friendly closed 7 months ago
1
Misleading summary in capscale (db-RDA)?

#636 fvlampe closed 7 months ago
4
Please see issue #631

#635 jarioksa closed 8 months ago
0
dbrda function does not let pseudocount through

#631 TuomasBorman closed 8 months ago
3
Why does PROTEST report high significance when PROCRUSTES residuals are high?

#630 NJOram closed 8 months ago
0
Random effects / dbrda with unifrac distances ?

#626 ladrub closed 8 months ago
1
Identifying significance for each level of a factor with envfit

#625 hkaspersen closed 8 months ago
0