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I cannot find an instance where remove_outliers_for_variable is actually used in the current code base. This is problematic as there is an excellent dataset with valid ranges for variables that is not…
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Start filling out details of README to make it easier for folks to build the benchmarks, as well as contribute.
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Lines 189 and afterwards are repeated; moreover, they appear to have been repeated from inside a for loop but then indented to be outside the for loop. As a result, it appears that this portion of the…
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excuse me，the original is a multi-label classification problem, I did not get to know how your label is processed, after study your code I think your label is a single multi-label classification probl…
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connection to db host mimic3-1.coh8b3jmul4y.us-west-2.rds.amazonaws.com fails. mlcc_mortality_prediction.ipynb attempts to connect to the above mentioned DB instance and the connection fails.
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Hi,
First of all, great work! We are looking forward to contributing our own benchmarks and tests!
Regarding the error I'm receiving, it appears that I am successfully implementing the scripts…
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`python extract_subjects.py /data/mimic3/csv/ /data/mimic3/csv/` fails:
```python
Traceback (most recent call last):
File "extract_subjects.py", line 60, in
phenotypes = add_hcup_ccs_2015…
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Trying to run through the readme on Ubuntu:
```sh
~/git/mimic3-benchmarks$ python scripts/extract_subjects.py /data/mimic3/csv/ /data/mimic3/csv/
Traceback (most recent call last):
File "scrip…
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Where to download the dataset described in your paper? Are they all publicly available?
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When I download MIMIC files from PhysioNetWorks, the CSVs have names like `PATIENTS.csv` and not `PATIENTS_DATA_TABLE.csv`. Does this mean some other preprocessing should happen before running `extrac…