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Hello fellow SCT developers,
I installed the latest version of SCT from GitHub and answered "no" to the last question (would you like to add the environment to your .bashrc file?) as I have multipl…
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using modified atlases and dMRI pipeline
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### Description
The command given as example (./sct_docker_images.py generate --version 3.2.4 --distros ubuntu:18.04 --generate-distro-specific-sct-tarball) does not create an offline tarball
…
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SCT only worked with python2.7 at issue creation.
Status as of 2018-02-28:
- Installation with bundled Conda python (with `SCT_MINICONDA=3`) works
- Unsupported non-installation with "in-place"…
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Hi,
This is Lei Ai from the Child Mind Institute. I pulled the docker image and tried to run some dataset (BIDS format), but a few seconds after running the following commands, it 'finished/stopp…
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Hi @fliem,
I was trying out this docker container image. I had previously run Freesurfer's longitudinal pipeline using the BIDS-Apps/Freesurfer image. TRACULA ran without any apparent issue. When I…
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```
$ singularity run -e .datalad/environments/fmriprep/image --version
fmriprep v1.2.5
```
It relates to https://github.com/poldracklab/fmriprep/issues/1311 , so addressing this one might reso…
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When running the container from #164, the group analysis doesn't run. This was attempted using the following command:
```
$ ndmg_bids ./bidsdir ./derivdir group dwi
Traceback (most recent call la…
gkiar updated
5 years ago
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Hi,
I have been working on converting ABCD DICOM files to NIfTI in BIDs format, and I encountered a problem, which has already been discussed in issue #126 . It seems like it had been solved since…
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I am not sure it is correct place to ask, if it is not I can remove the opened issue.
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I am trying to run `dMRI: Connectivity - Camino, CMTK, FreeSurfer` workflow
that is provided unde…