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uuid: fa3f5482e3502d7d5d86c61157ee6a7a
doc before pass in transform method looks like this.
`{'ancestor_ids': [], 'descendant_ids': ['a6f3b59708dda79f4a5b7afaa7e0dc94'], 'ancestors': [], 'descen…
etlds updated
4 years ago
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- only `metrics_summary.csv`
eg: /JB_219
```
Estimated Number of Cells,Mean Reads per Cell,Median Genes per Cell,Number of Reads,Valid Barcodes,Sequencing Saturation,Q30 Bases in Barcode,Q30 Base…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/ilyessr/conclus
Confirm the following by editing …
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- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (optional) I have confirmed this bug exists on the m…
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I was running spades in the test mode and it works well, no clue what is going here:
```
spades.py --pe1-s Bcc7419-MiSeq-A895A-PE_1_U.fastq.gz --pe1-s Bcc7419-MiSeq-A895A-PE_2_U.fastq.gz --pe1-12 B…
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I am following the "Scripts for "Current best-practices in single-cell RNA-seq: a tutorial"". The environment is set up successfully and can works for my single-cell data and produce many useful resul…
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```
[sc_atac_seq_snare]
[salmon_rnaseq_snareseq]
[seqFISH_lab_processed]
[salmon_rnaseq_bulk]
[salmon_rnaseq_sciseq]
```
(there is also `['ATACseq-bulk]`... but I'm going to assume that's just …
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Hi Seurat team,
Using the following code, I merge four 10x genomics scRNA-seq data.
```R
sc_qc
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The docs based on the spreadsheet you gave me are up: https://github.com/hubmapconsortium/ingest-validation-tools/tree/master/docs/scrnaseq
Proof read, and if changes or additions are necessary, l…
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Will I be able to filter out mouse reads from sc RNA-seq using your tool?
I aligned my fastq files separately to human and mouse references getting 2 bam files. My goal is to get rid of mouse cell…