ablab spades issues - Githubissues

ablab / spades

SPAdes Genome Assembler

http://ablab.github.io/spades/

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system call for: "['/opt/conda/envs/assembly/bin/spades-hammer', '/data/work/DNBSEQ/data1/SPAdes/corrected/configs/config.info']" finished abnormally, OS return value: 21

#1415 xiaoxinganlin closed 4 days ago
1
Phyluce CRITICAL issues - Expected assembly files were not found in output.

#1413 jb23590 closed 1 week ago
4
can I ignore these warnings and proceed with the next step of analysis using the assembly results?

#1411 luu520 closed 2 weeks ago
0
Relax blaze cache size assertion

#1409 asl closed 2 weeks ago
0
output

#1408 wanboqi closed 3 weeks ago
3
Split scaffold paths into contigs for pathracer to be used in seeds

#1407 asl closed 3 weeks ago
0
Misc fixes

#1406 asl closed 3 weeks ago
0
Update GFA reader to support GFA v1.2 paths

#1405 asl closed 3 weeks ago
0
Memory allocation error and abnormal termination, OS return value: -6

#1404 vivaxp5 opened 3 weeks ago
0
Spades, No Read Error Correction

#1403 ufaroooq closed 3 weeks ago
1
spades-hammer error : OS return value: -6

#1402 AmaliT opened 4 weeks ago
1
Issues with pathracer after 4.0 update

#1401 myco-bradshaw closed 3 weeks ago
3
spades-hammer finishing with abnormally, OS return value: -7 but with an (possibly) error message saying 'None' after 'writing down entries'

#1400 jfy133 opened 1 month ago
2
Assembly of single cells with spades

#1398 beacamara closed 1 month ago
1
CoverageData::inc_coverage(int): Assertion `value >= 0 || coverage_ > unsigned(-value)' failed

#1397 wanghang7410 closed 1 month ago
2
system call for:ERRORs

#1396 WJW024958 opened 1 month ago
1
Mismatch between Paths in GFA/.paths and scaffolds.fasta

#1395 schorlton-bugseq closed 1 month ago
3
finished abnormally, OS return value: -6 None

#1394 ZainBioBytes closed 1 month ago
3
metaspades hangs on k53 when in snakemake workflow

#1393 pdimens closed 1 month ago
5
The software did not run successfully

#1390 Ding327782 closed 1 month ago
1
How to generate an agp file from the scaffolds of spades?

#1389 Bio-finder opened 1 month ago
2
Spades hammer error

#1387 zafranulhaq12 opened 1 month ago
7
Cannot open temporary file for writing. OS return value: 108

#1386 ShyGuy509 closed 1 month ago
1
SPAdes is running abnormally, with some errors.

#1385 TAXICANI opened 1 month ago
1
mimalloc: warning: unable to allocate aligned OS memory directly, fall back to over-allocation

#1384 ranweiwei66 opened 2 months ago
1
mmap2 and memory

#1383 gnasseruncc opened 2 months ago
0
python3: relocation error

#1382 zivlang closed 2 months ago
1
(Hybrid) metaSPAdes finished abnormally, OS return value: 1

#1381 Hedi65 closed 2 months ago
1
[DO NOT MERGE] hpcSPAdes rebase, cleanup & implementation

#1380 asl opened 2 months ago
0
OS return value: 21

#1379 lyisrae1 closed 2 months ago
1
os return value: 1

#1378 LaurenceHdL opened 2 months ago
0
os return value 5

#1377 LaurenceHdL closed 2 months ago
1
OS return value: -7

#1376 LaurenceHdL opened 2 months ago
1
add missing <optional> header to src/projects/mts/kmer_multiplicity_counter.cpp

#1375 douglasgscofield closed 2 months ago
2
spades problem

#1374 ayan-bt opened 2 months ago
1
Ideas for Assembling an Extremely Large Dataset

#1373 howla1ke opened 2 months ago
1
== Error == system call for: "['/home/sd02/rww/install/miniconda3/bin/spades-core', '/home/sd02/rww/rawdata/RX3/fastp/spades/K77/configs/config.info']" finished abnormally, OS return value: -6

#1372 ranweiwei66 closed 2 months ago
3
OS return value: 4

#1371 rows0 opened 2 months ago
2
I have error with Spades for assembling viral sequence

#1370 lqhungpt closed 2 months ago
1
Segmentation fault during Kmer counting for metaplasmidSPAdes: Only for a few samples

#1368 Las02 opened 2 months ago
0
Question about the use of --trusted-contigs feature in Spades

#1367 Subhajeet1997 closed 2 months ago
0
Merge SpLitteR

#1366 Itolstoganov opened 2 months ago
1
finished abnormally, OS return value: -6

#1365 Asraid closed 2 months ago
3
AttributeError

#1364 daidiy1109 closed 2 months ago
2
== Error == system call for: "['spades-core', 'K55/configs/config.info']" finished abnormally, OS return value: -7

#1363 dozhun opened 2 months ago
1
Spades fails to compile from source on an aws r7i.2xlarge instance

#1362 wiebepo closed 2 weeks ago
8
Verification of expression 'cov_.size() > 10' failed in function 'void coverage_model::KMerCoverageModel::Fit()'

#1361 caiji-lh closed 3 months ago
1
Error when using conda spades

#1360 eggrandio closed 3 months ago
2
Error OS 21

#1359 azat1391 closed 3 months ago
1
Cannot find FASTQ files referenced by "Quick start" to test the installation

#1358 fantauzzi closed 3 months ago
1