ablab spades issues - Githubissues

ablab / spades

SPAdes Genome Assembler

http://ablab.github.io/spades/

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issues

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Build system should use available deps instead of externals when they are available

#1325 bzizou opened 5 hours ago
0
'Failed to limit memory to' error on Mac M3 Max, while SPAdes runs normally via a virtual Linux machine on the same computer.

#1324 mkazanov opened 20 hours ago
6
Memory Limitation/ Finished abnormally

#1323 ap790 opened 2 days ago
0
SPAdes: K21,33,55,77,99,127, didtn't generate any data in files: scaffolds.gfa and contigs.fasta

#1322 02Julie2023 closed 5 days ago
1
Python warning on 3.12

#1320 asl opened 1 week ago
0
SPAdes 4.0.0 incorrect Python version detection?

#1319 Kroh-N closed 1 week ago
2
spades error #255 unequal amount of reads

#1318 ainurftn closed 1 week ago
1
No error code metaspades just terminate after 13 hours of running kmer counting

#1317 stopguessingwho1am opened 1 week ago
3
abnormally, OS return value: -6

#1315 unique379r closed 2 weeks ago
1
Fix for package managers storing files in read-only

#1314 bzizou closed 18 hours ago
6
Error: spades-hammer, OS return value: 1

#1313 osvatic opened 3 weeks ago
2
spades-4.0.0 :: some test failure

#1312 EricDeveaud closed 4 weeks ago
5
Print extra unknowns in case of --continue

#1311 asl closed 1 month ago
1
Document gfa splitter

#1310 asl closed 1 month ago
0
Tools docs

#1309 andrewprzh closed 1 month ago
1
Document SRA input

#1307 asl closed 1 month ago
0
There is no contig.fasta in my output dir

#1306 SoSongzhi closed 1 month ago
1
How to use spades operate a fasta file, especially simulated reads in fasta format from badread?

#1305 SoSongzhi opened 1 month ago
8
Update changelog and add cosmetic corrections to the documentation

#1304 andrewprzh closed 1 month ago
0
Document SRA input

#1303 asl closed 1 month ago
0
Finalize manual for 4.0

#1302 asl closed 1 month ago
1
Update changelog for 4.0 release

#1301 asl closed 1 month ago
2
can not restart from last

#1298 catslu closed 1 month ago
4
== Error == system call for: "['SPAdes-3.15.5-Linux/bin/spades-hammer', 'spades_test/corrected/configs/config.info']" finished abnormally, OS return value: -11

#1297 Liuyw1217 closed 1 month ago
1
Checklist for SPAdes 4.0 release

#1296 asl closed 4 weeks ago
1
Document gfa-split

#1295 asl closed 1 month ago
0
Update `/usr/bin/env python` shebangs

#1294 asl closed 1 month ago
0
Write GFA header

#1293 asl closed 1 month ago
0
Document assembly graph output

#1292 asl closed 1 month ago
0
Stack trace - The program was terminated by segmentation fault

#1291 emilyn16 opened 1 month ago
0
OS return value: -6

#1290 Nishofei closed 1 month ago
1
finished abnormally, err code: -6

#1289 davidjstudholme closed 1 month ago
1
broken after five-day running

#1288 B1991ing opened 1 month ago
1
Add release snapshots workflow

#1287 asl closed 1 month ago
1
Fix some documentation regarding corona, bio, wastewater

#1286 1dayac closed 2 months ago
0
finished abnormally

#1285 Tsingsjeen closed 2 months ago
1
spades-core: /opt/conda/conda-bld/spades_1664217775513/work/src/project/spades/main.cpp:101: int main(int, char**): Assertion `cfg::get().K >= runtime_k::MIN_K && cfg::get().K < runtime_k::MAX_K' failed.finished abnormally, OS return value: -6

#1284 GuillaumeDore11 opened 2 months ago
2
Error on installing Spades on Mac M2 Chip Macbook

#1283 Illynani closed 2 months ago
1
system call finished abnormally, OS return value: -9

#1281 almarch24 closed 2 months ago
2
Cannot allocate memory. Error code: 12

#1279 ucassee closed 2 months ago
1
== Error == finished abnormally, OS return value: -11

#1277 efe3506 opened 2 months ago
5
Several errors: finished abnormally, OS return value: 21 None, Too many erroneous kmers, the estimates might be unreliable, Invalid kmer coverage histogram, make sure that the coverage is indeed uniform and Failed to determine erroneous kmer threshold. Threshold set to: 3

#1276 Wyclif3 closed 2 months ago
2
Ignore docs folder for assembler tests

#1275 asl closed 2 months ago
0
Minor improvements in the user manual

#1274 andrewprzh closed 2 months ago
0
Error while running SPAdes

#1273 sahilrishav2 closed 2 months ago
1
Test dataset does not work, spades-hammer fails

#1272 Pigrenok opened 2 months ago
2
SPADES ERROS

#1271 Longyulin22 closed 2 months ago
1
Change GetUnique() return type from char to init8_t

#1269 martin-g closed 2 months ago
12
SPAdes not perform correctly issue with spades-hammer

#1268 manotush closed 3 months ago
1
I keep runnning into "finished abnormally, err code: -11"

#1267 Wanjofu opened 3 months ago
2