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I am using the latest MRTRIX3 version pulled from git one week ago.
When trying to preprocess with dwipreproc a .mif file just extracted from the DICOMs using mrcat, I got the following error:
`…
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After finishing with hex-support, I'd really wish to improve the tutorials and user documentation. I'm open for any ideas, but here are some:
- Write more thorough introductions to the examples and…
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Hello, I have received following error while running fmriprep-docker:
as : "fmriprep-docker --fs-license-file $FREESURFER_HOM /Users/.../Desktop/BIDS/Test_data/sub-001 /Users/.../Desktop/BIDS/Tes…
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I've noticed a very recent issue where the T1 image is suddenly misaligned with the diffusion images (i.e. bias corrected).
![screen shot 2017-04-05 at 14 52 26](https://cloud.githubusercontent.com…
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Can you extend scanpy functions so that I can show gene expression level on plot generated by sc.pl.diffmap? just like that monocle2 does.
And, in which step should I execute MNN batch effect corre…
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I'm looking at network based clustering for single cell data, and was wondering about the louvain implementation used here. Is there a reason scanpy doesn't currently allow clustering on a weighted ne…
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Hello @falexwolf and @theislab
This issue is for discussing the wrapper for your trajectory inference method, PAGA, which we wrapped for our benchmarking study ([10.1101/276907](https://doi.org/10.11…
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Build new code using Python
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Hello:
I have a general question for the preprocessing of diffusion, I think right now the pipeline works in sequence, but if I want to parallelize the pipeline and without touching your souce code, …
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The purpose of this classification proposal is to capture how users _think_ about their data and how they would want to _search_ for it, but not to be a ground truth, MR physics-based classification t…