-
Add a `plot` method to `skbio.stats.distance.DissimilarityMatrix` that generates a heatmap. `DistanceMatrix` will inherit this method.
The [heatmap code](https://github.com/gregcaporaso/short-read-ta…
-
Add to this check list as you identify code that is ready to be changed.
- [ ] calls to `cogent.DNA.rc()` should be replaced with calls to bipy.core.sequence.DNA().rc()``
- [ ] calls to `cogent.parse.…
-
Additionally add `read` and `write` methods to these objects which call on `skbio.io.read` and `skbio.io.write`
-
During the review of #112, @gregcaporaso and I started discussing how `__str__` and `__repr__` should be implemented in bipy classes. We think it'd be good to discuss here to have consistency within b…
-
Since a recent upgrade i am getting the following error in the egeloen/ivory-google-map Bundle (DistanceMatrix)
It seems to be caused by widop/http-adapter 1.1.0 (when i copy the old version of widop/…
-
It would be awesome if the object had the ability to filter the distance matrix given a list of identifiers.
-
... to facilitate computing pairwise distances between all pairs of samples in a biom table. Was experimenting with this while re-factoring some functionality for the taxonomy assignment paper and cam…
-
Add unit tests for ShortestDistancePaths and DistanceMatrix scripts.
-
Considerando que estou em um posição e tenho um conjunto de pontos (coordenadas) para ir, qual é o ponto mais próximo?
Com isso, conseguimos identificar qual a estação bikePOA mais próxima de onde es…
-
To start with:
- BiologicalSequence, NucleotideSequence, DNA, DNASequence, RNA, RNASequence, Protein, ProteinSequence
- DistanceMatrix
- align_striped_smith_waterman
- SequenceCollection, Alignment
- …