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I am using the command (below) to convert cool format to h5, so that I can use hicMatrixPlot.
`hicConvertFormat -m K562.50kb.cool -o K562.50kb --inputFormat cool --outputFormat h5`
But it raises…
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I found a function in the script "trackPlot.py" , which can add links track and be imported by "hicPlotTADs.py". But I don't know how to use. Could you share a Configuration file template with me?
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Dear all,
I am trying to generate P(s) plots. It is easy to get these plots genome-wide. However, I would like to generate them considering interactions within TADs on one hand, and interactions be…
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Hi :
I installed HiCExplorer using `conda` and the version is 2.2 .
I want to use the function `hicMergeTADbins` ,But I found the command is missing . When I typed `hicexplorer -h` , I looked
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Dear all,
While using cool tools / HiGlass I came across the balancing of the matrices. In HiCExplorer we use the correction of the matrices you developed in 2012 (https://www.ncbi.nlm.nih.gov/pmc/…
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I have four Hi-C datasets, and I want to make four plots of TADs in the same file. So hicPlotTADs could do that?
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when I ues the hiccompare to find the difference bwteen samples ,How can konw where is the genome exsit the difference?
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Why does hicAverageRegions work great for the domain.bed and boundaries.bed files made from hicFindTADs, but not from a bed file for a ChIP MAcs2 peaks
Is there a specific formatting of the ChIP…
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Hello,
I suggested a few months ago an implementation for HicNormalize for spike-in controls. I see that it has been added as a future request so thank you for that.
In the interim, is there anoth…
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**Description of bug:**
I have two things, that maybe I'm just doing something wrong:
First, running `multiqc -v /data/run_biscuit/bam_files_realign/149122-cf-M.ben_list.b37/QC`
Gives out:
```…