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Dear Denes and Nick,
I am trying to construct Omnipath with all the extras.
I have first did: pall.load_omnipath(kinase_substrate_extra=True,ligand_receptor_extra=True,pathway_extra=True,remove_ht…
luli7 updated
5 years ago
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libfabric is the new buzz words in the networking API world. It's the way to access Intel OmniPath. We need some ways to interoperate with that lib to retrieve endpoint locality etc.
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Hi Denes and Nick,
I am not sure this is the best place to pose this question. But just in case you have an answer.
I am trying to plot a sub-network obtained from Omnipath (the core Omnipath with…
luli7 updated
5 years ago
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how can I get the targets of a drug using pypath/omnipath? I cannot find an example or a way to do it in the tutorials :/
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**Environment:**
- AWS ParallelCluster / CfnCluster version: aws-parallelcluster-2.5.1
- Config:
[cluster test-cluster]
scheduler = slurm
base_os = ubuntu1604
master_instance_type = c5n.4xl…
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ADIOS2 was configured on a 36-core Linux workstation with the following cmake output:
```
Currently Loaded Modules:
1) gcc/8.1 2) mpi/openmpi-4.0.1_gcc-8.1 3) cmake/3.15.1 4) python/3.6…
khuck updated
4 years ago
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Hi,
I am writing to ask a question for CNORFeeder. During the Weighting stage, the example in the tutorial uses "UniprotID=UniprotIDdream", may I know for my own case, how shall I define the Unipro…
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Hi Everyone,
I wonder whether there is some functions in pypath for exporting network to SBML, or SIF, which can keep the attributes (of edges)?
Thank you for your answer
Best regards
Lu
luli7 updated
5 years ago
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```
perfquery -x
PortSelect:......................1
CounterSelect:...................0x0000
PortXmitData:....................15217586
PortRcvData:.....................33204887641
PortXmitPkts:…
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### Version of Singularity:
singularity version 3.2.1-1.1.el7
### Expected behavior
run horovod on GPU-
the container runs fine without LSF when used with mpirun on multiple nodes. but when…