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# Problem
Currently both individual elements as well as Isotopes are modelled using `Element` which is a hacky conceptually, this implies that "an isotope is the same as an element":
```
>>> E…
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Wrapping of MSExperiment, ConsensusMap, etc. in pyOpenMS leads to very inefficient access.
E.g. calling getSpectra() will copy all spectra as individual python objects.
The question would be how to …
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Dear Rick and Team,
I would like to ask for help regarding how the scores for each feature are calculated from the generateCompounds() function. My main objective is to classify the features identi…
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Hi & thanks for your reply,
I am trying to use pyopenms 3.1.0 to store spectrum (read from .mzml file) and its corresponding peptide identification (identified by other software or manually validatio…
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We should extend https://pyopenms.readthedocs.io/en/latest/chromatographic_analysis.html
to also cover the simple cases of e.g., given a precursor and extraction window size - how to get the chromato…
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another test case in OpenMS crashes with
```
Comet version "2024.01 rev. 0"
Search start: 07/04/2024, 10:58:53 AM
- Input file: C:/dev/openms/src/tests/topp/THIRDPARTY/spectra_comet.mzML
…
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When running our test suite, the latest Comet version stalls at 2% of the search and runs indefinitely.
Previous Comet versions ran fine on the same input.
```
comet.exe ../openms/share/OpenMS/e…
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### Describe the question or discussion
Using the current PSI-MS CV, ETci(hc)D fragmentation can be represented in two seemingly equivalent ways.
For example, for denoting ETciD it is possible to us…
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Greetings,
I can't succeed in getting TOPPAS's help->TOPPAS tutorial F1 menu to point to the installed documentation.
I configued the software:
```
cmake -DUSE_EXTERNAL_SQLITECPP=ON -DUSE_EX…
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When working with float data arrays I ran into a very strange bug where the underlying memory view would somehow behave strange.
What seems to trigger the bug is when a FloatDataArray is accessed …