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### Description of bug
Spades get stucks at (chromosome_removal). Usually it take 5-10 minutes. However, it is stuck for more than 15 hours.
0:00:25.771 512M / 9G WARN General …
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We need to represent the workflow of synthesis orders progressing from decided to placed at Twist to succeeded/failed/abandoned/etc. to actually available at FreeGenes.
I think this can be done wit…
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Hi,
I tried using many names but could not figure out the issue. I thought I gave the wrong genome name.
Furthermore, I'd like to know what I should substitute for **genome**.
Python download_k…
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# Flanking DNA
GSL typically models just the designed DNA (e.g. locus, promoter gene terminator constructs), but during the process of construction it is very common to package the design into a la…
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[Kaiju](https://www.nature.com/articles/ncomms11257) finds maximum (in-)exact matches on the **protein-level** using the Burrows–Wheeler transform.
**TO DO**
Compare the Kaiju classification to K…
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Create module that provides general autoprotocol for performing a growth and expression of target gene.
Create a module that describes transformation of BL21 (or other expression host) with mutant pl…
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Hi,
Thanks for hosting this amazing competition!
Can you give any tips on how to express the top binder(s) in a cell-free system? For instance, consider Martin's top design:
```
SPFDLFLDRLPEQDPE…
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It has historically been common to simplify the depiction of an entire gene, operon, or gene cluster as a single glyph that is equivalent in form to that of the current SBOL CDS glyph.
![image](https…
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Hi, I've been trying to run mobmess on a set of plasmids. I've followed your installation manual, but I've come across the following error:
Traceback (most recent call last):
File "/well/aanense…
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Hi,
I really like the reference genome layout example from the wiki and am replicating that with my own data. The graph network looks good, however all of the genomes are rendered as linear molecul…