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**Describe the bug**
varfish-kiosk always displays an error after upload.
**To Reproduce**
Steps to reproduce the behavior:
1. Go to https://varfish-kiosk.bihealth.org
2. Upload any VCF and…
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**Describe the bug**
When postgres crashes (e.g., out of memory), it tries to recover from the write ahead log files (WAL) that are part of the prebuilt database tarball that we provide. Somehow …
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**Is your feature request related to a problem? Please describe.**
While it seems "nice" to be able to annotate with many different variant databases directly from VCF, the implementation is a bi…
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**Describe the bug**
Jannovar crashes for some variants for hg38 and RefSeq. This is the collection ticket for dbSNP positions.
**To Reproduce**
Run with Jannovar 0.36-SNAPSHOT and data relea…
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Hi there,
We're trying to install VarFish according your instructions (https://varfish-server.readthedocs.io/en/latest/admin_install.html), but when we download and extract the VarFish site data ar…
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**Is your feature request related to a problem? Please describe.**
The download URLs turn out to be unstable. In particular, RefSeq release 105 has now moved somewhere (TM) on the NCBI servers an…
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**Is your feature request related to a problem? Please describe.**
This is a usefulf eature in SODAR.
**Describe the solution you'd like**
Adjust the template such that this also works in Var…
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**Describe the bug**
In v0.23.4.
```
File "/usr/src/app/variants/views.py" in get_annotations_by_variant
896. case_uuid = case_id_to_uuid[flags.case_id]
Exception Type: UnboundL…
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**Is your feature request related to a problem? Please describe.**
There's a lot of documentation already. Some docker compose specific one is missing.
**Describe the solution you'd like**
Ad…
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When looking into the API problems @mkuhring is having, I noticed something weird in the SODAR logs.
It looks like there are occasional worker timeouts happening on the server, including (but not lim…