bihealth sodar-server issues

bihealth / sodar-server

SODAR: System for Omics Data Access and Retrieval

https://github.com/bihealth/sodar-server

MIT License

14 stars 3 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Display BAM/CRAM/VCF omit patterns in study shortcut modal

#1963 mikkonie opened 12 hours ago
0
Project list zone column displays zone icon with a NOT CREATED zone

#1962 mikkonie opened 15 hours ago
0
Add custom ISA-Tab template uploader app

#1961 mikkonie opened 3 days ago
0
Hide __output_dir field from ISA-Tab template UI?

#1960 mikkonie opened 3 days ago
0
Upgrade dependencies for v1.0.0

#1959 mikkonie opened 1 week ago
0
Uncaught exception in landing_zone_move with existing file sharing collection name

#1958 sellth closed 1 week ago
3
Add row index to update_row()

#1957 mikkonie closed 1 week ago
1
Add update_row() results in study table cache

#1956 mikkonie opened 1 week ago
0
Python-irodsclient v2.x raises permission errors in BatchMoveDataObjectsTask

#1955 mikkonie opened 1 week ago
4
Invalid assay measurement type in minimal ISA-Tab test files

#1954 mikkonie closed 1 week ago
1
TaskflowAPI._raise_flow_exception() crash when setting longer status than allowed by model

#1953 mikkonie closed 1 week ago
1
Review and optimize irodsbackend retrieval in study/assay pluginpoints/helpers

#1952 mikkonie closed 1 week ago
1
Update project for OpenAPI compatibility

#1951 mikkonie opened 2 weeks ago
0
Ensure study table caching works as expected for assay plugins

#1950 mikkonie closed 1 week ago
1
Bootstrap tooltip issues in landing zone list view

#1949 mikkonie closed 1 week ago
1
Allow modifying user membership if project is locked by taskflow

#1948 mikkonie closed 1 week ago
2
Sanitize iRODS paths in get_row_path() calls

#1947 mikkonie closed 1 week ago
1
Add generic assay plugin

#1946 sellth opened 3 weeks ago
0
feat: Add generic assayapp featuring dynamic links

#1945 sellth opened 3 weeks ago
1
Upgrade to python-irodsclient v2.0.x

#1944 mikkonie closed 3 weeks ago
5
Task name repeated in taskflowbackend exception messages

#1943 mikkonie closed 4 weeks ago
2
Increase CharField length for samplesheets models

#1942 mikkonie opened 1 month ago
2
Add retrying for BatchCalculateChecksumTask exceptions

#1941 mikkonie closed 1 month ago
1
Add logging for BatchCalculateChecksumTask exceptions

#1940 mikkonie closed 2 months ago
1
Add opt-out settings for email notifications

#1939 mikkonie opened 2 months ago
0
Fix README badge rendering

#1938 mikkonie closed 2 months ago
1
Add support for multiple VCF files in germline IGV sessions

#1937 mikkonie opened 3 months ago
0
Update REST API versioning for SODAR Core v1.0

#1936 mikkonie opened 3 months ago
0
Grant contributors and guests read access to all landing zones within project

#1935 mikkonie opened 3 months ago
0
Grant owners and delegates iRODS read/write access to contributor zones

#1934 mikkonie opened 3 months ago
0
Cleanup and prepare v0.14.3

#1933 mikkonie opened 3 months ago
0
IGV session merging opens a new session

#1932 mikkonie opened 3 months ago
3
Add documentation for Cyberduck iRODS access

#1931 sellth closed 3 months ago
1
Upgrade dependencies for v0.14.3

#1930 mikkonie opened 3 months ago
0
Merge v0.14.2 release

#1929 mikkonie closed 3 months ago
0
Source cell editing not working in assay table after row insert

#1928 mikkonie closed 3 months ago
2
Render pooled/split rows on row insert in sheet editor

#1927 mikkonie opened 3 months ago
0
Duplicate rows created on ISA-Tab export when splitting with unnamed data files

#1926 mikkonie opened 3 months ago
1
IGV omit setting defaults not correctly set on project creation

#1925 mikkonie closed 4 months ago
1
Rename get_igv_omit_override(), refactor use

#1924 mikkonie closed 4 months ago
1
Add glob pattern and path support for SHEETS_IGV_OMIT_*

#1923 mikkonie closed 4 months ago
1
Upgrade to django-sodar-core v1.0.0

#1922 mikkonie opened 4 months ago
0
Handle missing family column in germline study cache update

#1921 mikkonie closed 4 months ago
4
Add additional functionality to IGV omit patterns for VCF/BAM/CRAM files

#1920 mikkonie closed 4 months ago
1
Add optional detailed landing zone taskflow output

#1919 mikkonie opened 4 months ago
0
Allow setup behind reverse proxy #1917

#1918 HaraldWilhelmi closed 3 months ago
0
Allow setup behind reverse proxy

#1917 HaraldWilhelmi closed 3 months ago
1
Add landingzones taskflow task tests

#1916 mikkonie opened 4 months ago
0
Added settings needed for reverse proxy setup

#1915 HaraldWilhelmi closed 4 months ago
1
Germline study app helper used in cancer study app plugin tests

#1914 mikkonie closed 4 months ago
1