-
Hello!
Sorry to disturb, I have been encountering this error lately while using the qQCreport function and I cannot seem to figure out what is the problem there. I hope you guys can give a hand.
…
-
From Zymo RRBS kit manual
"To calculate the bisulfite conversion rate, we suggest using the percentage of the unmethylated cytosines in non-CpG contexts for mammalian samples; if the samples may be …
-
User Report:
------------
Link: [https://gatk.broadinstitute.org/hc/en-us/community/posts/360055990891-CollectGcBiasMetrics-Array-Index-Out-Of-Bounds-Exception](https://gatk.broadinstitute.org/hc/en-u…
-
Hi @FelixKrueger,
This might be a naive question. I am observing large discrepancies between genome coverage and CpG coverage.
For example, after deduplication step, total number of reads = 3720…
-
Hi, again.
i got question again. Thank you for answer before.
on my fastq, there are same sequence reads.
and i align this sequence to hg19.
but only some of reads align.
for example one re…
-
Validator output:
```
__total_errors__:1 …
-
Hi Felix,
I realized that previously I couldn't get cytosine report, that's why I asked you about allc file. The reason is that it cannot find genome folder, even though I run the code in correct d…
-
Hi,
I want to get the average methylation % for a targeted region, for example, see below...
| Chrom | start | end | Meth_% | count_methylated | count_unmethylated |
|:-----:|:-------:|:---…
-
I am trying to split the bam file using samtools to get reads aligned to the chloroplast genome using the following command:
`samtools sort S1_combine.deduplicated.bam -o S1_combine.deduplicated.sor…
-
Hi Peng,
So I have a couple of new questions regarding some issues I had with model training on gpu.
* First I add a warning I'm not sure to have understood with a 20M samples training file and …