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I've recently captured images of U2OS cells undergoing mitosis following RNAi screen and wanted analyse the effect on spindles. The image meets the input data requirements as per the Spindle3D Read m…
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Hi,
I am currently trying to use the human xenium samples in the HEST1k dataset and downloaded the h5ad files. I was very surprised when I looked at the cell numbers. They ranged between 1000-10.00…
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Hi
I create the text file markers.txt with markers in each row for the clusterization in each row.
But it gives permanently the error 'couldn’t find the file'
The string in yml file
options:
…
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**Describe the plugin**
Have one command with a toggle for on or off. [p]nickprotect on/off .
**Expected behavior**
The plugin will detect if your nickname is changed in a server and attempt to c…
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### Project short name:
MyocardialInfarctionAmruteCITE
### Primary Wrangler:
Ida
### Secondary Wrangler:
### Associated files
* Google Drive: [folder](https://drive.google.com/drive/folders/12Lw3o…
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Listr can appear to hang when doing a slow operation like downloading images for the first time. We should show this progress.
## Expected Behavior
Progress bar should be included in Listr outpu…
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Hi,
Is there a way to put stardist in a macro to apply the segmentation for each slice and recombine them to reconstruct 3D nuclei ?
It would be great, I try but don't find the command to skip the i…
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## Description
I try to learn the sopa with example data.
Here is the code I copy from example file.
patches = sopa.segmentation.Patches2D(sdata, image_key, patch_width=1200, patch_overlap=50)
…
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I would like to reproduce the results on the ANHIR dataset, how do I prepare the dataset?Specifically, how do I set up the source_path and target_path? Is it only possible to align single picture？ it …