embl-cba spindle3d issues

embl-cba / spindle3d

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issues

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Difficulty with DNA thresholding when metaphase plate is sparse (and sample is quasi 2-D)

#37 gcav1992 opened 1 year ago
9
Batch processing

#36 gzaffagnini closed 2 years ago
5
Improve README: Add example images

#35 tischi closed 2 years ago
5
Improve README: 3D requirements

#34 tischi closed 2 years ago
1
Metaphase Spindle Analysis

#33 RankAma opened 2 years ago
11
Move to embl-cba

#32 tischi closed 2 years ago
2
2D spindle morphometrics

#31 coralzhou opened 3 years ago
9
Cell surface area

#30 TobiasKletter closed 3 years ago
27
maxMetaphasePlateLength and width

#29 tischi closed 3 years ago
0
DNA threshold

#28 tischi closed 3 years ago
0
GUI

#27 TobiasKletter opened 3 years ago
1
Measurements

#26 tischi closed 3 years ago
1
RefinementDistance

#25 tischi closed 3 years ago
4
Wiki

#24 TobiasKletter closed 3 years ago
8
Ground truth testing set

#23 TobiasKletter closed 3 years ago
14
Background

#22 TobiasKletter opened 3 years ago
11
Sample image download

#21 tischi closed 3 years ago
3
Assisted workflow

#20 TobiasKletter opened 3 years ago
19
Add test with the publication image data

#19 tischi closed 3 years ago
0
Make the advanced command extend the basic command

#18 tischi closed 3 years ago
0
DNA volume: ROI for Otsu thresholding

#17 TobiasKletter opened 3 years ago
1
Add option to provide cell masks

#16 TobiasKletter closed 3 years ago
7
Remove DNA border objects

#15 tischi opened 3 years ago
0
Spindle shape

#14 TobiasKletter closed 3 years ago
0
Spindle tubulin sum

#13 TobiasKletter closed 3 years ago
2
DNA: remove non-connected components

#12 TobiasKletter closed 3 years ago
2
Multiple bright DNA objects

#11 tischi opened 4 years ago
42
Bright tubulin signals in close proximity

#10 TobiasKletter opened 4 years ago
32
Segmentation artifacts

#9 TobiasKletter closed 3 years ago
7
DNA thresholding gone wrong

#8 TobiasKletter closed 4 years ago
4
DNA intermediate results images

#7 TobiasKletter closed 4 years ago
3
Various exceptions

#6 TobiasKletter closed 4 years ago
4
Erroneous and missing measurements despite correct DNA segmentation

#5 TobiasKletter closed 4 years ago
8
icon

#4 tischi closed 4 years ago
4
update site

#3 tischi opened 4 years ago
3
versions

#2 tischi opened 4 years ago
0
Spindle-to-surface angle

#1 TobiasKletter closed 4 years ago
3