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embl-cba / spindle3d

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Measurements #26

Closed tischi closed 3 years ago

tischi commented 3 years ago

@TobiasKletter

Which ones should we remove / is there anything missing?

## Spindle3D Measurements
{
  "version": "Spindle Morphometry Version: 0.7.7",
  "dnaVolumeThreshold": 142.0,
  "dnaInitialThreshold": 129.0,
  "metaphasePlateLength": 22.0,
  "metaphasePlateWidth": 4.0,
  "chromatinVolume": 1601.0,
  "chromatinDilation": 0.0,
  "spindleLength": 20.202103850836924,
  "spindlePoleARefinementDistance": 2.0463381929681126,
  "spindlePoleBRefinementDistance": 1.8027756377319946,
  "spindleThreshold": 40.75390625,
  "spindleSNR": 2.1096383119502082,
  "spindleVolume": 3181.453125,
  "spindleWidthMin": 16.25,
  "spindleWidthMax": 20.0,
  "spindleCenterToMetaphasePlateCenterDistance": 1.776583800443987,
  "spindleAngle": 10.212572630912248,
  "tubulinSpindleIntensityVariation": 0.5746417691762596,
  "tubulinSpindleAverageIntensity": 57.98081654904156,
  "tubulinCellularAverageIntensity": NaN,
  "tublinCytoplasmAverageIntensity": 22.85573122529644,
  "spindleWidthAvg": 17.973684210526315,
  "spindleAspectRatio": 1.123982351876725,
  "cellVolume": NaN,
  "log": "Analysis finished."
}
TobiasKletter commented 3 years ago

All fine like this. If anything, DNA initial threshold could be removed, it was mostly for debugging, right?