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Hi
I would like to reproduce 3T and 7T dMRI processing pipeline inserting my own denoising method as a first step. Which pipeline is it suitable for this? Can I just change this initial step?
Than…
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``tica``'s init method has four parameters that will determine the output dimension, and that have accumulated over time as different methods were added (especially kinetic maps and commute maps):
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Dear Thijs,
Thanks for this amazing tool, we're using it on single shell (B=1300), 60 direction diffusion data (single no diffusion volume). It runs perfectly for most of my participants but for on…
nicdc updated
4 years ago
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It could be helpful for people new to the field (or to this website) to navigate it if the website were structured along the lines of a pipeline, e.g.:
1. Introduction / General neuroscience introd…
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I'm making a number of changes on a local fork and am wondering what others thoughts are on the following:
1) Omitting freesurfer reconstruction entirely from dmriprep for now (particularly since i…
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Hi,
I'm currently exploring `qsiprep v0.6.4` on Ubuntu 18.04 and encountered a problem with CUDA. Specifically, very early on, the pipeline throws the error
```
191120-19:50:44,55 nipype.workflow W…
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Dear community,
eddy_quad from FSL 6.0.1 doesn't seem to accept input defined by the nipype input spec. It only runs if input is formatted like -bvals "bvals.scheme" compared to -bvals="bvals.schem…
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I got this error trying to install 'tutorial_mapper' on OS X 10.11.6 in a conda 3.6 virtual enviornment
(it worked on Ubuntu 16.06 LTS):
```
$ pip install -r requirements.txt
Collecting giotto-lea…
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Hi,
I am packaging mandelbulber2 for NixOS (see NixOS/nixpkgs#66390), which doesn't install mandelbulber in '/usr/share' (plug: see [here](https://nixos.org/nixos/nix-pills/why-you-should-give-it-a…
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Creating a trigger for this now, but I wanted to be sure you haven't already done this?
Plan is to add 'native' as an option to output_spaces to essentially skip lines 474-L556 of qsiprep/workflows…