nipreps dmriprep issues

nipreps / dmriprep

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

https://www.nipreps.org/dmriprep

Apache License 2.0

63 stars 24 forks source link

issues

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gen_eddy_files failed to run

#204 LangFiL opened 3 months ago
0
FIX: typo in omp_threads

#203 celprov closed 7 months ago
0
[WARNING] Citeproc: citation eddy not found

#202 celprov opened 9 months ago
0
FIX: fix typo that prevented to ignore fieldmaps

#201 celprov closed 7 months ago
1
No dwi derivatives in output directory

#200 maryjis closed 1 month ago
1
The tutorial of dMRIprep singularity using was not work

#198 alienx-zero closed 1 year ago
1
dMRIPrep generalizations (m 12-24)

#197 esavary opened 1 year ago
0
dMRIPrep roadmap (m3-9)

#196 esavary opened 1 year ago
0
MAINT: Rotate CircleCI secrets and setup up org-level context

#195 oesteban opened 1 year ago
0
Running problem of a file "scans.json"

#194 Clancy-wu opened 2 years ago
0
Mif conversion

#193 GalKepler closed 2 years ago
0
Keeping track of fMRIPrep.

#192 GalKepler opened 2 years ago
1
[ENH] Keep up with fMRIPrep's infrastructure

#191 GalKepler opened 2 years ago
0
[ENH] Mrtrix3-based pipeline

#190 GalKepler opened 2 years ago
0
Qa

#189 GalKepler closed 2 years ago
1
Most of the mrtrix-based pipeline is done

#188 GalKepler closed 2 years ago
0
added bids filterring functionality to data collection process

#187 GalKepler closed 2 years ago
2
MAINT: Revise dependencies

#185 oesteban opened 2 years ago
0
MAINT: Use the base ``nipreps/miniconda`` image

#184 oesteban opened 2 years ago
2
First LTS release

#183 oesteban opened 2 years ago
0
Build comprehensive integration and stress testing into dMRIPrep

#182 oesteban opened 2 years ago
0
Integration of eddymotion

#181 oesteban opened 2 years ago
0
Benchmark the accuracy of image co-registration to the same subject's T1w image

#180 oesteban opened 2 years ago
0
Gibbs ringing - estimation and correction workflow

#179 oesteban opened 2 years ago
0
DOC: Roadmap update

#178 oesteban opened 2 years ago
1
MAINT: Update several CircleCI settings

#177 oesteban closed 2 years ago
0
MAINT: Pin h5py separately.

#176 arokem closed 2 years ago
2
FIX: Output eddy parameter files to work dir instead of input dir

#175 josephmje closed 2 years ago
0
MAINT: Adopt new NiPreps' governance model

#174 oesteban opened 2 years ago
4
Error on "gen_eddy_files"

#172 h-w-k opened 3 years ago
1
Investigate SD estimation with the two polarities of DWI on ds001771

#171 oesteban opened 3 years ago
0
Reference workflow - extreme clipping in ds000206

#170 oesteban opened 3 years ago
0
ENH: Use *NiWorkflows*' EPI-reference workflow

#169 oesteban closed 3 years ago
7
SDC - Horrible co-registration of *b=0* reference and EPI reference

#168 oesteban opened 3 years ago
1
DOC: Add copyright note to every file, add NOTICE file, update Dockefile

#167 oesteban closed 3 years ago
0
ENH: Write out *b=0* reference(s)

#166 josephmje closed 3 years ago
0
No folder output directory of dwi created

#165 nabaruns closed 3 years ago
4
FIX: Clear cache for ds000206 dataset

#164 josephmje closed 3 years ago
0
DOC: Update external dependency versions

#163 josephmje closed 3 years ago
2
Reportlet to check on eddy/emc results

#162 oesteban opened 3 years ago
0
Write out *b=0* reference(s)

#161 oesteban closed 3 years ago
0
using dMRIprep for the first time

#160 Meryam1985 closed 3 years ago
3
eddy: msg=ECScanManager::GetShellIndicies: Data not shelled

#159 levchenkoegor closed 3 years ago
3
FIX: PEPOLAR & mapped fieldmaps not showing up in reports

#158 oesteban closed 3 years ago
0
Estimated fieldmap present in reports only for fieldmap-less

#157 oesteban closed 3 years ago
0
FIX: Update to new *NiWorkflows* API

#156 oesteban closed 3 years ago
0
MAINT: Refactor Dockerfile with better use of miniconda

#155 oesteban closed 3 years ago
1
ENH: Move pandoc execution to the end of the runtime

#154 oesteban closed 3 years ago
2
ENH: *fieldmap-less* integration from *SDCFlows* 2.0

#153 oesteban closed 3 years ago
1
MAINT: Update *SDCFlows* pinning to the latest 2.0.0 release

#152 oesteban closed 3 years ago
0