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Hi there,
I was wondering if you use a downsampled read input for the alignment against the viral genomes to produce the XYZ-gdc-viral.bam file?
I'm asking since I get significantly more reads m…
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**Imported issue:**
- Author: Nicholas Twerdochlib
- Date: 2012-05-05 20:34:38
- Legacy ID: 3206
- Version: 1.4.17
**Steps to reproduce:**
1. Synergy server running (same system as VMware Workstati…
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Alignment instantaneously failed, v0.0.9, win32:
R59_S11_L001_R1_001.fastq
R59_S11_L001_R2_001.fastq
Against HPVs.fasta
From jobVerboseLog.txt:
"Warning: Could not open read file \"C:\\Users\…
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## Versions
- JabRef version 3.8.1
- on Ubuntu 16.04
- java version "1.8.0_121" (oracle)
## Issue
The program hangs with no CPU utilization after editing an abstract (removing a HTML cod…
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Hello @roryk, would it be possible to get TPMs as well as counts from the transcripts in the user-defined spike-in FASTA for both the `salmon` and `sailfish` pipelines? If I remember correctly the imp…
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When aligning long reads (~8kb) I found that the output wasn't producing qual scores or sequence names.
`vg map -B 200 -k 8 -f t.fq -g hpv.gcsa -x hpv.xg -J`
Erik figured out that it's because thes…
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```
Adding a wrapper to the hypre eigensolver and a corresponding modification of
ex3/ex3p, please?
Andrew Knyazev
```
Original issue reported on code.google.com by `2AndrewK...@gmail.com` on 9 Au…
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When using a `spikein_fasta`, a separate `salmon` index is generated for the spike-ins. This may lead to no mapable reads, for instance in cases of viral spike-in definitions and no viral nucleotides …
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## The Assignment
(reposted by Dr. B, who also repaired the links!) @RJP43 @brookestewart @nlottig94 @spadafour @mmm202 @jlm323 @laurenmcguigan @mjb232
It's much too easy to lie with numbers and gra…
RJP43 updated
6 years ago