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Replacement patterns + tests
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I encountered text encoding issues in `OMOP_CDM_v6_0.csv` while I was working on updating the cdmv6 model for Rabbit in a Hat.
There are some encoding issues, some examples:
https://github.com/OH…
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During the ETL process you use the source_to_concept_map to map your concepts, but for most *_concept_id fields your concepts can only belong to a single domain.
If you want to filter the concepts …
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NOTE: Using main latest I always get 0 records in my drug_era table and it finishes in less then a second. I had to use the pull request https://github.com/OHDSI/ETL-Synthea/pull/48 to get the drug…
scivm updated
3 years ago
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I executed:
impala-shell -d omop_cdm -f OMOP_CDM_impala_ddl.sql -i impalaserver
Starting Impala Shell without Kerberos authentication
Connected to impalaserver:21000
and saw:
Query: insert …
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### Expected behavior
validateSchema works on 5.3.
### Actual behavior
validateSchema function appears to not work with v5.3 due to effective_drug_dose field being deprecated.
### Steps to rep…
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https://github.com/OHDSI/CommonDataModel/wiki/Results-Schema
"Currently the only two tables in the 'Results' schema are COHORT and COHORT_DEFINITON, though likely more will be added over the course…
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moving old proposal to the latest platform.
http://www.ohdsi.org/web/wiki/doku.php?id=documentation:next_cdm:clinical_trial
For new conventions - please use this thread on the forum
http://foru…
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Running on an Azure SQL Database from R Studio on macOS:
I also tried this without prefixing the database name (lynxcare) to the schema name and got the same result.
```
> CdmInspection::cdmIns…
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The statement:
`CREATE INDEX idx_concept_id_varchar ON concept (CAST(concept_id AS VARCHAR));`
is not valid SQL Server syntax. This breaks the SQL Server "OMOP CDM sql server pk indexes.txt" scr…