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Hm - the last commit does not work properly because
in `pluralize_rules` we have rules for both singular to plural AND plural to plural
while
in `singularize_rules`it is only plural to singular
(??…
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We still need to create a HMM for adenylation domains based on (Beer et al., 2014) boundaries and Maryland seed domains.
In order to achieve this, while also extending the database at the same time, …
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Several terms have been created by Swiss-Prot for subcellular locations that I would like to map to GO.
The terms are perispore, spore cortex, spore outer (or cortex) membrane, spore coat, spore core…
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Returns gram+ for gram-
fxstr updated
9 years ago
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The data download didn't work for reactome. The script looks fine but I can't see the log files so I don't know what happened last time.
tell @rachellyne
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chromosome is correctly labeled as `region` but it's being stored by the GFF parser as a chromosome.
Options:
1. remove first line manually
2. add a list of features to not load
3. don't load first l…
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The pathways for target/compound/publication API calls return error code 500 when the pathway_organism parameter is defined (e.g. with Homo sapiens). It works fine in the general "Pathways: List" call…
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Synthetic Biology Mine
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From some comments by Kristian Axelsen:
''I searched for "P19456" (AC for PMA2_ARATH, EC 3.6.3.6) but the only result was a structure for "Paraneoplastic antigen Ma2 [Human]"
[[BR]]
When I search for…
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Hi,
I am trying to get the taxonomy after a blast search and I came across your biopython scripts which they did look very promising.
Ihave tried them with a Mac 10.8.3 with python and biopython ins…