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Hi,
I am wandering whether the counts data should be in log or linear scale.
Thank you
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I am unexperienced in python, and I don't know how to link ggplot2 to the conda environment to perform the plots on the statistical results from cellphonedb. I already have R and ggplot2 package insta…
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I have updated Liana to 0.1.0 version from 0.0.9. It seems like method 'cellchat' is not there anymore and 'call_cellchat' exists instead.
First, does this mean that re-implemented version of cellch…
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Dear all,
upon running the `cellphonedb method analysis test_meta.txt test_counts.txt` I get the following error.
> AttributeError: module 'time' has no attribute 'clock'
I have updated my ipy…
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Hello did anybody meet this problem?
recently, I'm running cellphonedb on different three data, two of them are fine, but one of them repeatedly with the Broken Pipe error, does anybody come with th…
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Has anyone run into this issue?
cellphonedb method statistical_analysis test_meta.txt test_counts.txt
/Users/marktaylor/cpdb-venv/lib/python3.8/site-packages/sklearn/utils/deprecation.py:144: F…
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hi guys
I want to know whether this software supports the needs of plant research
many thanks
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Hi, thanks for developing such a nice tools. I am currently using it for scrnaseq datatset. I ran statistical analysis with the metadata file and count file. I got the outputs for that , but when I am…
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I am trying to run the command using the below code provided:
cellphonedb plot dot_plot --columns in/columns.txt
I can run and generate the total dot plot fine (see [here](https://drive.google.com…