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Hi,
I thought my installation went fine under python3.
And I can import pypath successfully.
When I ran the first example pa=pypath.PyPath()
python complains that there is no PyPath() attribute …
luli7 updated
5 years ago
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When I open the target profile page for a gene, say [BRAF](https://www.targetvalidation.org/target/ENSG00000157764), and open the **Protein interactions** panel, I see a blue loading spinner that does…
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Dear Omnipath Developers,
I am installing pypath under Windows subsystem for Linux (windows10 – Ubuntu 18.04).
After separately installing all the softwares required for preinstallation (cairo, py…
luli7 updated
5 years ago
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*Original issue: https://charm.cs.illinois.edu/redmine/issues/1419*
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Detect if it's an Omnipath architecture, give a warning to use MPI layer instead and quit.
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Hi Everyone,
I am using pypath 0.8.18 with Python3.6 on Ubuntu 18.04.
I tried to load annotation from pypath.annot.AnnotationTable() and get following error message:
File "/usr/lib/python3.6/z…
luli7 updated
5 years ago
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Hi Everyone,
I am using PyPath dev version 0.8.20 under python 3.6.
I have pickled annotation, however when loading it back, I got following error messages (I also got exactly the same message whe…
luli7 updated
5 years ago
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Hi,
I've compiled openmpi-3.1.4:
./configure --prefix=/usr/local/openmpi-ofed/intel/3.1.4 --disable-dlopen --enable-mpi-fortran --enable-mpi-cxx --enable-shared --enable-static --disable-java --with…
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Currently ucx doesn't work on omnipath. One issue that needs to be addressed is the max_inline_data usage, which currently is unconditional in ucx. On omnipath make gtest fails with
```
ud_ifac…
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*Original issue: https://charm.cs.illinois.edu/redmine/issues/1409*
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Charm++ programs crash before launch with a "Length mismatch" abort for the ibverbs SMP build on Stampede KNL.
Build command…
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These commands are presented in the first sections of the pypath tutorial:
http://pypath.omnipathdb.org/notebooks/pypath_build_networks.html
and I'm just wondering what the difference between th…