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Aaron wants to do this before we proceed with any further lab work or library prep. His thoughts on moving forward:
We have some basic metagenome data from two samples onto
which we can spike in rea…
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After I ran the whole B.anthracis genome contig through PhyloSift, I took the lastal candidate sequences from the BLAST directory and concatenated the sequences into a fasta file. I then used this fil…
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FBAMODEL.t is currently consuming ~4G of memory and has been running for 5 minutes. We need to try to get this down to an acceptable level. (< 1 minute for all tests)
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[PPOBackend.pm 244]Database error: DBD::SQLite::db prepare failed: no such column: defaultStudyMedia at /Users/jplfaria/Model-SEED-core/lib/PPO/PPOBackend.pm line 226.