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I tried to download some of the new ilastik models from bioimage.io, but ran into several issues:
## Download not possible
For these models, the card opening after clicking the `ilastik` icon do…
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Hi there,
I get the following error when running the spec checker:
https://github.com/deepimagej/models/runs/3242600205
The error comes from this line in the code:
https://github.com/bioimage…
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todos from https://github.com/bioimage-io/spec-bioimage-io/issues/97#issuecomment-859533766_
- [x] reactivate ci for tests (potentially with #103)
- [x] clean up `schema.Model` base class `schema.RD…
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but instead in .npz
https://github.com/hci-unihd/plant-seg/tree/master/bioimage-io/UNet2DArabidopsisOvules.model
This leads to errors when using the bioimage.io package downloader
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while the following test cases pass on cpu, they fail on gpu (on windows; only difference: `CUDA_VISIBLE_DEVICES=""`)
1. tests\prediction_pipeline\test_prediction_pipeline.py:36 (test_prediction_pipe…
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As discussed in #33, tensorflow protobuffer formats (saved_model.pb + variables) will go together in a zip file. How should we specify them in the configuration file? Should the info come twice in the…
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@FynnBe I am looking for a way to verify a yaml string in the bioengine, I confirm that I can import bioimageio.spec, could you provide a short script for me to verify a yaml string?
oeway updated
3 years ago
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A recent change make it producing the wrong supported weights format file: https://github.com/bioimage-io/spec-bioimage-io/blob/6e0051a8697c5c03074ed42e8f0671522646d5bf/weight_formats_spec.json#L129-L…
oeway updated
3 years ago
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**Submitting author:** @ColemanRHarris (Coleman Harris)
**Repository:** https://github.com/ColemanRHarris/mxnorm
**Version:** v1.0.0
**Editor:** @osorensen
**Reviewers:** @askerdb, @tijeco
**Managing…
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@FynnBe as far as I can see the functionality left here is only needed for deprecated things (the old transformations, dataset and model runner ideas).
Do we still need it for anything?
If not, we s…