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kreshuklab
/
plant-seg
A tool for cell instance aware segmentation in densely packed 3D volumetric images
https://kreshuklab.github.io/plant-seg/
MIT License
88
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30
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ci(pre-commit.ci): autoupdate
#284
pre-commit-ci[bot]
closed
6 days ago
0
Refactor Actions because docs build contains conda build
#283
qin-yu
opened
1 week ago
0
"Open File" widget cannot load two datasets from the same HDF5 file
#282
qin-yu
opened
3 weeks ago
0
`Need more labels` error from `vigra` during watershed in classic GUI
#281
athulrv
opened
3 weeks ago
1
Proofreading tool doesn't allow adding scribbles
#280
Buglakova
opened
3 weeks ago
1
fix(cropping): use RangeSlider to fix #278 | handle `None` image
#279
qin-yu
closed
3 weeks ago
1
Cropping widget allows float, should be int only
#278
qin-yu
closed
3 weeks ago
0
fix(installation): remove old configs if `KeyError` | macOS installation
#277
qin-yu
closed
4 weeks ago
2
Pin python=3.11 for MacOS
#276
lorenzocerrone
closed
4 weeks ago
0
fixes PlantSeg crash on apple silicon #273
#275
lorenzocerrone
closed
4 weeks ago
8
Error while trying to open GUI in the latest PlantSeg version
#274
adkrishnan
opened
1 month ago
9
PlantSeg crash on apple silicon
#273
lorenzocerrone
closed
4 weeks ago
2
feat(pred): check and free VRAM for prediction with oversized patch
#272
qin-yu
closed
4 weeks ago
2
fix(docs): teach Qt to find napari icons
#271
qin-yu
closed
1 month ago
0
Watershed uses only one CPU and runs very slow on large volumes
#270
qin-yu
opened
1 month ago
2
fix: links in docs, docstring warning and theme override
#269
qin-yu
closed
1 month ago
0
CUDA memory not freed after OOM error
#268
qin-yu
closed
4 weeks ago
1
chore(pre-commit): add conventional commits
#267
qin-yu
closed
1 month ago
0
chore: migrate from `bumpversion` to `bump-my-version`
#266
qin-yu
closed
1 month ago
0
[pre-commit.ci] autoupdate
#265
pre-commit-ci[bot]
closed
1 month ago
0
Break `pre-commit`
#264
qin-yu
closed
1 month ago
0
Use `pre-commit`
#263
qin-yu
closed
1 month ago
3
Test: Fix always-skipped test and misleading name
#262
qin-yu
closed
1 month ago
0
Tests for model zoo is always skipped
#261
qin-yu
closed
1 month ago
0
Doc: Add revision date and committer plugins
#260
qin-yu
closed
1 month ago
0
Doc: Fix and update rescaling widget screenshot docs
#259
qin-yu
closed
1 month ago
0
Tests for rescaling widget
#258
qin-yu
closed
1 month ago
0
Fix docs build in the CI
#257
lorenzocerrone
closed
1 month ago
0
Improve use of `Enum` as widget choices and fix types
#256
qin-yu
closed
1 month ago
1
Improve use of `Enum` as widget choices and fix types
#255
qin-yu
closed
1 month ago
0
Model resolution should allow `None` to avoid a default like `(1.0, 1.0, 1.0)`
#254
qin-yu
opened
1 month ago
1
Need tests for core functionalities
#253
qin-yu
opened
1 month ago
0
Recommend users a halo for U-Nets
#252
qin-yu
closed
1 month ago
0
Provide a theoretical minimum halo for each model
#251
qin-yu
closed
1 month ago
0
Heuristics for parameters: patch size, halo, and rescale factor
#250
qin-yu
opened
1 month ago
1
API docs | Docs screenshots | Refactor rescaling | Rearrange widgets
#249
lorenzocerrone
closed
1 month ago
8
BioImage.IO Core: Improve interface for PlantSeg models
#248
qin-yu
closed
1 month ago
5
BioImage.IO Core: Execute PlantSeg-compatible models by nickname
#247
qin-yu
closed
1 month ago
4
Rearrange tabs in napari
#246
lorenzocerrone
closed
1 month ago
2
Documentation deployment failure
#245
qin-yu
closed
1 month ago
1
Cancel split/merge in proofreading
#244
Buglakova
opened
1 month ago
1
Error reading and writing tiff in plantseg environment
#243
Buglakova
closed
1 month ago
3
No cuda selection at predictions on Napari GUI
#242
Giannisbiol
closed
1 month ago
5
Plantseg --gui, no buttons to begin the workflow
#241
Giannisbiol
opened
1 month ago
10
Doc: Data/models, train/add new models, Jupyter Book remnant
#240
qin-yu
closed
1 month ago
0
Headless: Handle multi-channel prediction output and add docs
#239
qin-yu
closed
1 month ago
0
Headless mode cannot handle multi-channel output
#238
qin-yu
closed
1 month ago
1
Fix Legacy GUI after v1.7.0
#237
qin-yu
closed
1 month ago
0
AttributeError: 'str' object has no attribute 'open'
#236
Giannisbiol
closed
1 month ago
6
Type bug in headless.py
#235
qin-yu
closed
1 month ago
1
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