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kreshuklab
/
plant-seg
A tool for cell instance aware segmentation in densely packed 3D volumetric images
https://kreshuklab.github.io/plant-seg/
MIT License
99
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31
forks
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ci(docs): fetch all git history/tags/branches for MkDocs dates
#366
qin-yu
closed
12 hours ago
1
Documentation creation and last edit dates are wrong
#365
qin-yu
closed
12 hours ago
0
Fix and promote PlantSeg v1 installation
#364
qin-yu
closed
12 hours ago
1
fix(env): Pydantic v2.10 causes bioimageio.spec issues
#363
qin-yu
closed
17 hours ago
1
fix: widgets should have optional arg for updating other widgets
#362
qin-yu
closed
4 days ago
0
fix: allow but warn all runtime errors in 3D `find_a_max_patch_shape()`
#361
qin-yu
closed
4 days ago
1
Non-OOM error can happen during patch size finder
#360
qin-yu
closed
17 hours ago
1
fix: allow more runtime errors in `find_batch_size()`
#359
qin-yu
closed
6 days ago
1
Non-OOM error can happen during `find_batch_size()`
#358
qin-yu
closed
6 days ago
1
ci(pre-commit.ci): autoupdate
#357
pre-commit-ci[bot]
closed
1 week ago
1
Improved Headless + gui
#356
lorenzocerrone
closed
1 month ago
1
Proofreading improvements
#355
lorenzocerrone
closed
1 month ago
1
fix: #353
#354
lorenzocerrone
closed
1 month ago
1
remove_false_positives_by_foreground_probability only works in 3D
#353
lorenzocerrone
closed
1 month ago
0
remove_false_positives_by_foreground_probability only works in 3D
#352
lorenzocerrone
closed
1 month ago
0
Areas of GUI improvement after v2.0.0a4
#351
qin-yu
closed
1 month ago
0
Classic GUI is unavailable for PlantSeg 2.0.
#350
athulrv
closed
12 hours ago
6
ci(pre-commit.ci): autoupdate
#349
pre-commit-ci[bot]
closed
1 month ago
1
Match conda recipe and include `package_data` logo
#348
qin-yu
closed
1 month ago
1
fix (#344): update windows install instructions
#347
lorenzocerrone
closed
1 month ago
1
Logo not showing on windows
#346
lorenzocerrone
closed
1 month ago
0
Question regarding one repeated volume across splits
#345
anwai98
closed
1 month ago
4
DLL load failed while importing _nifty: The specified module could not be found.
#344
Giannisbiol
closed
1 month ago
5
Fix voxel size unit
#343
qin-yu
closed
1 month ago
1
Possible issues in 1.8.1
#342
PauCasanova
opened
1 month ago
1
New export widget
#341
lorenzocerrone
closed
1 month ago
1
Example config.yaml for current plant-seg version missing
#340
Dampfnudeldroid
opened
1 month ago
1
allow the use of '-' and 'µm' as unit for voxel size
#339
AlexisMaizel
closed
1 month ago
1
Unify prediction
#338
qin-yu
opened
2 months ago
0
Fix perfomance on mac
#337
lorenzocerrone
closed
1 month ago
1
fix: avoid reading logo file from docs folder
#336
qin-yu
closed
2 months ago
1
fix h5 export
#335
lorenzocerrone
closed
2 months ago
2
Bug in export h5
#334
lorenzocerrone
closed
2 months ago
0
Fix version related issues: bump version, comparison and Anaconda upload
#333
qin-yu
closed
2 months ago
1
Anaconda authentication token has expired
#332
qin-yu
closed
2 months ago
1
refactor(GUI): rename and reorder widgets for intuitive sequential flow
#331
qin-yu
closed
2 months ago
0
Refactor and recover widgets: cropping and label processing
#330
qin-yu
closed
2 months ago
1
Qt Warning: `QMainWindowLayout::count: ?`
#329
qin-yu
closed
2 months ago
0
Fix and integrate lifted multicut widget into agglomeration widget
#328
qin-yu
closed
2 months ago
1
Record issue missing button
#327
qin-yu
closed
2 months ago
0
PlantSeg v2: Final polishment of GUI
#326
qin-yu
closed
2 months ago
1
Need to use `Enum` in a better way
#325
qin-yu
opened
2 months ago
0
Areas of GUI improvement before v2.0.0-alpha
#324
qin-yu
opened
2 months ago
4
Add un-/re-do and save-/load-states for proofreading tool
#323
qin-yu
closed
2 months ago
1
PlantSeg v2: Finalise docs
#322
qin-yu
closed
2 months ago
1
Recover and document over-/under-seg fix by nuclei
#321
qin-yu
closed
2 months ago
1
PlantSeg v2 docs base
#320
qin-yu
closed
2 months ago
1
Use of `Enum` should be consistent
#319
qin-yu
opened
2 months ago
0
Fix and document distance transform watershed for 2D pmaps/images
#318
qin-yu
closed
2 months ago
1
Group widgets for batch `.hide()`/`.show()`
#317
qin-yu
closed
2 months ago
0
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