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---
id: libsbmlsim
version: 1.4.0
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_LibSBMLSim/2a05dc6cab2bca141f42a538f0a7e36ed343c1cd/biosimulators.json
specifications…
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---
id: gillespy2
version: 1.6.2
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_GillesPy2/827e4cd608fb83f431da29de33b729d68de7a5ee/biosimulators.json
specificationsPa…
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---
id: gillespy2
version: 1.6.2
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_GillesPy2/a518df5d5735fd33519fea77ece0d249217d8226/biosimulators.json
specificationsPa…
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---
id: vcell
version: 7.4.0.14
specificationsUrl: https://raw.githubusercontent.com/virtualcell/vcell/master/biosimulators.json
specificationsPatch:
version: 7.4.0.14
image:
url: ghcr.…
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---
id: libsbmlsim
version: 1.4.0
specificationsUrl: https://raw.githubusercontent.com/biosimulators/libsbmlsim/08e124afca6f1378faa27b4caaf8f89c24ffaa1d/biosimulators.json
specificationsPatch:
…
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Weird behaviour: implementing a PositiveDomain callback causes the saveat argument in solve() to be ignored. I also tried making a SavingCallback instead and using both in a CallbackSet, but the outco…
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Currently, we can either parametrize our ODE using the output from a neural network and optimize over its parameters θ. This seems to be the usual path. Alternatively, can also optimize over coefficie…
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---
id: cobrapy
version: 0.22.0
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_COBRApy/279d477cf29eecfa9df3f606f43d7ed81acb5d17/biosimulators.json
specificationsPatch…
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---
id: cbmpy
version: 0.7.25
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_CBMPy/828d797ec4e448503de231fdab3e0e26e58d577b/biosimulators.json
specificationsPatch:
…
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---
id: libsbmlsim
version: 1.4.0
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_LibSBMLSim/97b4bac597620acbfb18b4768f2fccdebb03fadd/biosimulators.json
specificat…