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## System information
- Apalache version: `0.45.4 | build: 99508e4` (latest release)
- OS: Linux, Ubuntu 24.04 (latest release)
- JDK version [e.g. OpenJDK 0.8.0]: openjdk 21.0.4
## Descriptio…
lucab updated
1 month ago
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Hi,
I am using the convert_SV_callers_vcf.pl for Delly and Lumpy(smoove) output files (BCF and VCF). It does not work for Delly and Lumpy output files. the files are empty or damaged files.
I am…
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Issue #2 proposes to make `uint` a subtype of `int`, with the type checker and runtime system verifying that these are nonnegative integers. **Subtyping integers can be generalized in integer [refinem…
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I've been using neovim's terminal feature extensively lately (notice all my bug reports :P) and I had a couple really neat ideas that I think would be a must have feature for anyone who uses ssh and n…
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I'm working on a project that uses packet sockets directly, and I have to calculate the IPv4 checksum on my own since I'm building from Ethernet frames up.
I notice that `x/net/ipv4` doesn't provid…
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Hello,
I'm trying to think of a way that I can use this tool to detect variants that occur more frequently in one group than another. For example, suppose I have 50 samples sequenced to 20X coverag…
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I really don't want to use GATK indel realigner.
![image](https://user-images.githubusercontent.com/453972/45338661-aec8fd00-b5d1-11e8-960e-0c7e2eeb3c3e.png)
```
CP006053 1598997 . …
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Need to write some more extensive documentation.
- [x] General background
- [x] How tools fit together `assemble`, `call` etc.
- [ ] Use of more advanced features such as parallel tempering
- [x…
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Dear Mike,
Thanks for your previous help! I successfully run the tool on a human sample and get the output `IGHV_functional_allele_calls.txt`, but I am curious what does the output mean. Specifical…
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@Starnite: all the best for your finals! I'm going to leave here one research questions and one coding challenge that will be useful for this work.
1. Say you're given a set of `n` full-length PB2 …