stat-lab EvalSVcallers issues

stat-lab / EvalSVcallers

Evaluate the performances (precision and recall) of structural variation (SV) callers

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vcf file for Delly is not found

#22 tyyiyi opened 1 month ago
4
Inconsistency of output files

#21 gamzemdn opened 2 months ago
1
Sim-A fasta file is missing

#20 kuro7766 opened 2 months ago
2
The script "convert_SV_callers_vcf.pl" discarded a significant number of CNVnator results.

#19 jingydz opened 7 months ago
1
which file is the NA12878 and NA19240 SV GRCh38 reference dataset?

#18 jingydz opened 7 months ago
2
convert_SV_callers_vcf.pl fail to convert my delly and lumpy sv.out

#17 tyyiyi opened 2 years ago
24
reference SV dataset for NA12878

#16 Manuelaio closed 3 years ago
2
Seeking help with F measure statistical analysis

#15 Mkddb closed 3 years ago
6
Recall Values for INS calling via MELT

#14 Mkddb opened 3 years ago
2
Dissimilar data points in re-analysis

#13 Mkddb closed 3 years ago
4
Filtering_Long Read Variants From NA12878_DGV-2016_LR-assembly.vcf

#12 Mkddb closed 3 years ago
10
Failed at merging genotype files

#11 Mkddb closed 3 years ago
0
INS Evaluation using MELT

#10 Mkddb opened 3 years ago
2
evaluate_SV_callers.pl skips some SVTYPE from simulation truth VCF for precision and Recall values calculation.

#9 bioinfo89 opened 3 years ago
26
Evaluation of Delly SV calls vs reference set NA12878 shows all zeros for precision and recall in the output (evaluate_SV_callers.pl)

#8 bioinfo89 closed 3 years ago
3
evaluate_SV_overlap_calls.pl fails to find Delly vcf

#7 bioinfo89 closed 3 years ago
3
VCF conversion fails for CNVnator and Manta

#6 bioinfo89 closed 3 years ago
3
Wrong directory!

#5 spsc83 closed 3 years ago
1
Vaquita conversion script.

#4 joshuak94 closed 3 years ago
1
Location of files used to generate simulated data?

#3 joshuak94 closed 3 years ago
9
Parameters used for aligning short and long read data?

#2 joshuak94 closed 4 years ago
3
Suggestion/Request: add more other SV caller using long reads

#1 tjiangHIT closed 3 years ago
3