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Hi,
I want to run the BSLMM in Gemma, but include a relatedness matrix in which none of the individuals are related. To do this I created a matrix of 0s and 1s. Where 1 is relatedness to self and 0 i…
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Files do not upload from the local machine (says 100% but never completes) when I right click on the file manager in the browser and select "Upload" > "Choose Files" from the drop-down menu.
Files …
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mysql --host=ensembldb.ensembl.org --port=3306 --user=anonymous -p
no password
https://www.ensembl.org/info/data/mysql.html
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I see you have written optimization code using Python and Differential Evolution. Scipy has solvers for non-linear equations, however scipy's default initial parameter values are all 1.0. This can be …
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In your discussion of gradient descent, you point out the problem of initial parameter values for the gradient descent's starting point. For this reason, the authors of scipy added a genetic algorithm…
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The fitGambin has (I think) a strange interface. It becomes obvious(?) now there is a function for generating random numbers. To generate random numbers from the gambin distribution
```{r}
x = rga…
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Hi the curated codes are online in my github repository here: https://github.com/mkborregaard/codes-for-published-papers/tree/master/Miraldo%20et%20al.%202016
Since I wrote almost all of the code, …
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Why do you use the Pareto Domination Tournament in the NSGA2 example for selectiong and not the original selection algorithm (binary tournament selection)?
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Post your lay and scientific abstracts below. Aim for a maximum of 250 words for both. Thanks!
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The "_snp.txt" files contains information about original scientific publication for SNPs. However it might not be straightforward to find the correct publication. More information about those papers n…