-
#### File(s)
pbta-histologies.tsv
#### Release
v5
#### Link to [OpenPBTA-manuscript](https://github.com/AlexsLemonade/OpenPBTA-manuscript/)
N/A
#### Question/issue
RNA-seq sampl…
-
#### File(s)
pbta-snv-strelka2.vep.maf.gz
#### Release
v5
#### Link to [OpenPBTA-manuscript](https://github.com/AlexsLemonade/OpenPBTA-manuscript/)
https://github.com/AlexsLemonade/Open…
-
Jenkins jobs start by running on master, and do a git clone of the openj9 repo in order to get the jenkins code required before they start running on a worker and then a Node. Although we may be using…
-
#### File(s)
_What data file(s) does this issue pertain to?_
`pbta-histologies.tsv`
#### Release
_What release are you using?_
v5
#### Link to [OpenPBTA-manuscript](https://github.com/Al…
-
#### Scientific goals
_What are the scientific goals of the analysis?_
Accurately predict sex of PBTA samples for downstream analyses
#### Proposed methods
_What methods do you plan to u…
-
Evaluate concordance and determine overall set of high-confidence somatic variants for PBTA.
-
### Problem
13 samples that have data in the MAF files (`pbta-snv-mutect2.vep.maf.gz` and `pbta-snv-strelka2.vep.maf.gz`) are missing from the metadata. I am using data `release-v2-20190809` and do…
-
Both rules systems (QW and HQ) lack an entertainment value when it comes to character improvement.
Explanation: If heropoints are used for raising abilities (either directly or through experience p…
-
#### File(s)
_What data file(s) does this issue pertain to?_
pbta-sv-lumpy.tsv.gz
#### Release
_What release are you using?_
V2/V3
#### Link to [OpenPBTA-manuscript](https://github.com…
-
We have generated CNV output from [ControlFreeC](http://boevalab.com/FREEC/) and [CNVKit](https://cnvkit.readthedocs.io/en/stable/), but are seeking individuals to determine consensus focal calls and/…