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Thank you for the awesome tool. It's very useful.
I'm new to Squidpy and currently use it to process my 10 x Visium H&E datasets. But I have came across an issue about the ImageContainer obj…
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**Submitting author:** @ColemanRHarris (Coleman Harris)
**Repository:** https://github.com/ColemanRHarris/mxnorm
**Branch with paper.md** (empty if default branch): joss-paper
**Version:** v1.0.2-joss…
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Hi all, your squidpy platform is awesome! I was wondering if you have any functions that are compatible/able to be implemented for analyzing Slide-SeqV2 data? Do you have any plans to implement slid…
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### Type of the feature
- [ ] New function in `sqduipy.im`?
- [ ] New function in `squidpy.gr`?
- [ ] New function in `squidpy.pl`?
- [ ] Change an existing functionality, such as default behavi…
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When trying to save my anndata object as h5ad after processing with scVelo with .write
```
TypeError: No method has been defined for writing elements to
Above error raised while writing key 'mo…
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Hi, I tried to compare gr.ligrec with base cellphonedb results and noticed that they were not returning the same results and was wondering why. I've attached my notebook as a pdf:
[testing_cpdb.pdf](…
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Quick reminder to integrate stuff discussed in #64 to contributing guide (how docs are regenerated, manual update of examples.rst in main repo)
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- [x] Additional function parameters, change functionality or change defaults?
- [ ] New estimator in `cr.tl.estimators`?
- [ ] New kernel in `cr.tl.kernels`?
- [ ] New gene trend model in `cr.ul…
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Add tutorial to show cellprofiler usage with squidpy. Working on it.
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I understand that the integration of CrosstalkR w/ Liana is still under dev, but I am excited to use this combination of packages. I have run Liana and aggregated the results and used the aggregated i…