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squidpy_notebooks
Tutorials for Squidpy
https://squidpy.readthedocs.io/en/stable/
MIT License
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Add niche calculation tutorial
#127
LLehner
opened
1 week ago
1
fix link
#126
giovp
closed
2 months ago
1
Add Xenium tutorial using spatialdata
#125
LLehner
opened
2 months ago
4
fix precomit and link
#124
giovp
closed
9 months ago
1
ValueError with calculate_image_features() in tutorial_visium_hne.ipynb
#123
estellad
opened
10 months ago
0
ValueError: After removing rows with only NaN interactions, none remain.
#122
realzehuali
opened
10 months ago
10
Fix method link
#121
LLehner
closed
12 months ago
1
environment.yml is missing
#120
alanocallaghan
opened
1 year ago
0
update structure
#119
giovp
closed
1 year ago
1
Fix typo
#118
LLehner
closed
1 year ago
1
Update auto_examples
#117
LLehner
closed
1 year ago
1
MyST notebooks
#116
LLehner
closed
1 year ago
2
Improve example for var_by_distance methods
#115
LLehner
closed
1 year ago
1
Add new example for tools/var_by_dist.py and plotting/var_by_dist.py
#114
LLehner
closed
1 year ago
1
Tutorials
#113
LLehner
closed
1 year ago
1
remove notebooks from CI
#112
giovp
closed
1 year ago
1
example for tl.exp_dist()
#111
LLehner
closed
1 year ago
2
Updated the quality control plots
#110
pakiessling
closed
1 year ago
11
update thumbnail
#109
giovp
closed
1 year ago
1
update
#108
giovp
closed
1 year ago
1
update
#107
giovp
closed
1 year ago
1
added tutorial notebook for vizgen mouse liver data
#106
giovp
closed
1 year ago
3
removed some commented out code
#105
LLehner
closed
1 year ago
1
added tutorial notebook for vizgen mouse liver data
#104
giovp
closed
1 year ago
4
added tutorial notebook for vizgen mouse liver data
#103
giovp
closed
1 year ago
1
xenium tutorial
#102
LLehner
closed
1 year ago
1
update sphinx
#101
giovp
closed
1 year ago
0
added tutorial notebook for vizgen mouse liver data
#100
cornhundred
closed
1 year ago
34
Update version of Tangram
#99
gaddamshreya
opened
2 years ago
1
Update math
#98
dineshpalli
closed
2 years ago
1
minor fixes to titles
#97
giovp
closed
2 years ago
1
Tutorial vizgen
#96
giovp
closed
2 years ago
1
fix nanostring
#95
giovp
closed
2 years ago
1
Replace scanpy.pl.spatial with squidpy.pl.spatial_scatter
#94
dineshpalli
closed
2 years ago
5
Create tutorial_vizgen
#93
dineshpalli
closed
2 years ago
10
squidpy.im.ImageContainer.show() not showing image when run in Terminal (MacOS)
#92
amcrab
closed
2 years ago
1
prepare nanostring data and analysis
#91
dineshpalli
closed
2 years ago
37
rename org
#90
giovp
closed
2 years ago
0
change master to main
#89
giovp
closed
2 years ago
2
alpha parameter in sq.pl.spatial_scatter
#88
jnmark
closed
2 years ago
0
add examples for plotting
#87
giovp
closed
2 years ago
1
Merge dev
#86
michalk8
closed
2 years ago
1
Misc/remove dev
#85
michalk8
closed
2 years ago
1
Create compute_generate_spot_crops.py
#84
dineshpalli
closed
2 years ago
0
example for ImageContainer.apply
#83
dineshpalli
closed
2 years ago
0
[pre-commit.ci] pre-commit autoupdate
#82
pre-commit-ci[bot]
closed
2 years ago
0
Dev
#81
michalk8
closed
2 years ago
1
update tangram
#80
giovp
closed
2 years ago
1
scrna-sea and mFISH example
#79
FADHLyemen
closed
2 years ago
5
Update Tangram tutorial
#78
michalk8
closed
2 years ago
1
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