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squidpy_notebooks
Tutorials for Squidpy
https://squidpy.readthedocs.io/en/stable/
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Fix typo in Xenium tutorial
#140
LLehner
closed
3 weeks ago
1
(fix): use correct heading
#139
ilan-gold
closed
3 weeks ago
1
(fix): remove broken spatialdata link
#138
ilan-gold
closed
3 weeks ago
1
Add tutorial for sliding window PR
#137
timtreis
closed
4 weeks ago
1
Add tutorial notebook showing the sliding_window functionality
#136
timtreis
closed
4 weeks ago
0
Issue with Xenium Tutorial Notebook
#135
albert239825
closed
3 weeks ago
3
Add morphology toolbox example
#134
timtreis
opened
2 months ago
1
change titles to vizgen tutorial
#133
giovp
closed
2 months ago
1
fix vizgen tutorial to remove titles that appear in index
#132
giovp
closed
2 months ago
0
add warning for napari removal
#131
giovp
closed
3 months ago
1
add warning for napari removal
#130
giovp
closed
3 months ago
1
Git history is getting huge due to Jupyter Notebooks
#129
timtreis
opened
3 months ago
4
Two improvements to the Xenium notebook
#128
LucaMarconato
opened
4 months ago
4
Add niche calculation tutorial
#127
LLehner
opened
4 months ago
1
fix link
#126
giovp
closed
6 months ago
1
Add Xenium tutorial using spatialdata
#125
LLehner
closed
2 months ago
13
fix precomit and link
#124
giovp
closed
1 year ago
1
ValueError with calculate_image_features() in tutorial_visium_hne.ipynb
#123
estellad
opened
1 year ago
0
ValueError: After removing rows with only NaN interactions, none remain.
#122
realzehuali
opened
1 year ago
10
Fix method link
#121
LLehner
closed
1 year ago
1
environment.yml is missing
#120
alanocallaghan
opened
1 year ago
4
update structure
#119
giovp
closed
1 year ago
1
Fix typo
#118
LLehner
closed
1 year ago
1
Update auto_examples
#117
LLehner
closed
1 year ago
1
MyST notebooks
#116
LLehner
closed
1 year ago
2
Improve example for var_by_distance methods
#115
LLehner
closed
1 year ago
1
Add new example for tools/var_by_dist.py and plotting/var_by_dist.py
#114
LLehner
closed
1 year ago
1
Tutorials
#113
LLehner
closed
1 year ago
1
remove notebooks from CI
#112
giovp
closed
1 year ago
1
example for tl.exp_dist()
#111
LLehner
closed
1 year ago
2
Updated the quality control plots
#110
pakiessling
closed
1 year ago
11
update thumbnail
#109
giovp
closed
2 years ago
1
update
#108
giovp
closed
2 years ago
1
update
#107
giovp
closed
2 years ago
1
added tutorial notebook for vizgen mouse liver data
#106
giovp
closed
2 years ago
3
removed some commented out code
#105
LLehner
closed
2 years ago
1
added tutorial notebook for vizgen mouse liver data
#104
giovp
closed
2 years ago
4
added tutorial notebook for vizgen mouse liver data
#103
giovp
closed
2 years ago
1
xenium tutorial
#102
LLehner
closed
2 years ago
1
update sphinx
#101
giovp
closed
2 years ago
0
added tutorial notebook for vizgen mouse liver data
#100
cornhundred
closed
2 years ago
34
Update version of Tangram
#99
gaddamshreya
opened
2 years ago
1
Update math
#98
dineshpalli
closed
2 years ago
1
minor fixes to titles
#97
giovp
closed
2 years ago
1
Tutorial vizgen
#96
giovp
closed
2 years ago
1
fix nanostring
#95
giovp
closed
2 years ago
1
Replace scanpy.pl.spatial with squidpy.pl.spatial_scatter
#94
dineshpalli
closed
2 years ago
5
Create tutorial_vizgen
#93
dineshpalli
closed
2 years ago
10
squidpy.im.ImageContainer.show() not showing image when run in Terminal (MacOS)
#92
amcrab
closed
2 years ago
1
prepare nanostring data and analysis
#91
dineshpalli
closed
2 years ago
37
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