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I would like to propose adding the option to use the "Fast Optimal Global Sequence Alignment Algorithm" (FOGSAA) [1] both for pairwise and multiple sequence alignments. Given that FOGSAA provides alig…
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I'm having trouble obtaining the lens file and gff file using your code (deal_gff_ncbi.py
). I have downloaded the GFF3, PEP and CDS files from the website: http://bioinfo.sibs.ac.cn/Am/download_v2.p…
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- [ ] Create knowledge graph
- [ ] Get mappings for multiomics data
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CWL allows to describe tools/pipelines/workflows and enhances reproducibility. Hoverer, describing is not only about how to run or technical info about execution environment but also about what this …
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### Description of the bug
Hi all,
Thank you for this great tools.
**Here is the description of my issue**
I run the workflow without the ancestry projection module and it runs fine. But when ad…
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Hi, I'm having the same problem: max() arg is an empty sequence.
`SEVtras.sEV_recognizer(sample_file='./sample_file', out_path='./outputs', species='Homo',alpha=0.09, score_t='10')`
I've tried to re…
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Any metrics from [assemblathon_stats.pl](https://github.com/ucdavis-bioinformatics/assemblathon2-analysis/blob/master/assemblathon_stats.pl) for __Contigs__ calculated from __Scaffolds__ are highly bi…
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I'm currently having issues with the Quiver step of FALCON_unzip. Everything seems to run fine up to running `fc_quiver.py`. At this point it prepares the shell scripts to run each contig group and it…
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Dear developers,
Thanks for developing a very useful tool!
I wonder if it possible to start the pipeline with VCF files only, without NGS short read data and processing.
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### Description of the issue:
A large amount of reactions in the model do not have a descriptive name.
#### Expected feature/value/output:
More reactions with descriptive names in the model.
#…