PacificBiosciences FALCON_unzip issues

PacificBiosciences / FALCON_unzip

Making diploid assembly becomes common practice for genomic study

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issues

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Falcon unzip mechanisms

#170 mentorlg opened 3 years ago
1
Input data for Falcon-Unzip

#169 mentorlg closed 3 years ago
1
Can I use falcon_unzip withou pacbio bams?

#168 sunnycqcn closed 3 years ago
1
ERROR when running falcon unzip/3-unzip/1-hasm

#167 HaploKit opened 3 years ago
0
How to set NPROC, MB, and njobs according to my computation enviroment?

#166 llengcn closed 3 years ago
1
falcon-unzip failed at 3-unzip/reads/get_read_ctg_map

#165 Jinxian52099 opened 4 years ago
1
ImportError: This package should not be accessible on Python 3.

#164 ymatmt opened 4 years ago
1
how is the relation with falcon-unzip and falcon-phase

#163 leeun357 closed 4 years ago
2
About phasing polyploid genome

#162 EugeneKim76 closed 4 years ago
1
Is it possible to run falcon_unzip on HGAP4 output from SMRTlink ?

#161 Philosamia closed 4 years ago
1
Code releases

#160 frikiluser closed 4 years ago
5
error at 4-polish step with "failed multiprocessing"

#159 y842739756 closed 4 years ago
7
Which one is the current version of falcon?

#158 JYLeeBioinfo closed 4 years ago
2
Falcon error in tan-split stage

#157 madhubioinfo opened 4 years ago
0
Error installing FALCON

#156 cement-head closed 4 years ago
1
Error when running FALCON_unzip (in 3-unzip/1-hasm)

#155 daisyko closed 4 years ago
4
how to change variantCaller options

#154 chanikyu closed 5 years ago
1
[Error] Cannot run Falcon_unzip on greg200k-sv2 data set because of unsupported sequencing chemistry combination

#153 AxelMacFoly closed 4 years ago
3
[ERROR]Task Node(3-unzip/reads/dump_rawread_ids) failed with exit-code=1

#152 crkmary closed 5 years ago
1
Unable to run test data

#151 Tcvalenzuela closed 4 years ago
1
rr-hctg-track2 not found during polishing (fc_unzip.py)

#150 Neato-Nick closed 5 years ago
0
Blasr : terminate called after throwing an instance of 'std::runtime_error'

#149 anu24s opened 5 years ago
1
raw sequence data fastq to sam

#148 wj1106 closed 5 years ago
6
Running FALCON and FALCON_UNZIP on different clusters

#147 bostanict closed 5 years ago
1
python segfault in ext_falcon.so

#146 AGI-chandler closed 5 years ago
3
Unzip error

#145 Bromo0562 closed 5 years ago
1
for a very long deletion like 10kb between alleles, which allele will be placed in the primary contig?

#144 mapleforest closed 5 years ago
1
Problem running unzip from conda on clusters

#143 Lcornet closed 5 years ago
1
getting error "from: can't read /var/mail/qiime2.plugin"

#142 srinivasanma closed 5 years ago
1
AttributeError: 'IntervalTree' object has no attribute 'search'

#141 hangch123 closed 5 years ago
4
SMRT Link falcon assembly

#140 mictadlo closed 5 years ago
0
I couldn't fine mummer-3.3+

#139 wyim-pgl closed 6 years ago
2
please add /lib/libgcc_s.so.1 to prebuilt binaries or -static-libgcc

#138 wangyugui closed 6 years ago
7
Arrow/variantCaller error

#137 guilbar closed 6 years ago
2
Difficulty in installing manually

#136 conchoecia closed 6 years ago
2
Not Found The requested URL /public/falcon/falcon-2018.07.25-07.01-py2.7-ucs4.tar.gz was not found on this server.

#135 conchoecia closed 6 years ago
1
quiver step not parallizing

#134 BenjaminSchwessinger closed 6 years ago
2
Issue with 4-quiver/merge-reads step

#133 BenjaminSchwessinger closed 6 years ago
5
Permission denied for the downloading URL of FALCON binaries

#132 yjx1217 closed 6 years ago
1
Quiver step of toy sample install_unzip_180725.sh

#131 BenjaminSchwessinger closed 6 years ago
7
falcon_unzip failed at 3-unzip/2-htigs/chunk_000***F

#130 zjzace closed 6 years ago
3
Binaries installation error

#129 ghannum closed 6 years ago
1
Unzip unfinished run (ask Node(3-unzip/2-htigs/chunk_000591F) failed with exit-code=256)

#128 veronneaupy closed 6 years ago
2
How to set pbalign tmpdir when running fc-quiver.py

#127 phillip-mcclurg-driscolls closed 6 years ago
3
timed out waiting for hasm_done

#126 olechnwin closed 6 years ago
4
Exception: Timed out waiting for hasm_done

#125 bgbrink closed 5 years ago
3
FALCON_unzip is not working

#124 ruthfa closed 6 years ago
1
speed up blasr

#123 olechnwin closed 6 years ago
4
FALCON_unzip run error, (fc_run:524 - INFO - Setup logging from file "None".)

#122 whc2 closed 6 years ago
3
wrong nucmer option in dedup_h_tigs.py

#121 rob123king closed 6 years ago
4