PacificBiosciences FALCON_unzip issues

PacificBiosciences / FALCON_unzip

Making diploid assembly becomes common practice for genomic study

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issues

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FALCON Unzip ERROR during first step in "reads" folder

#120 uceleste closed 6 years ago
1
running unzip using raw or preads assembly failing at track_reads.sh

#119 rob123king closed 6 years ago
3
question about falcon unzip result

#118 Jeff-Liu9453 opened 6 years ago
1
Qs: FALCON-unzip pipeline result

#117 olechnwin opened 6 years ago
0
[ERROR]Task Node(1-preads_ovl) failed with exit-code=256

#116 AteeqMKhaliq opened 6 years ago
1
specify custom nproc for blasr

#115 leleory opened 6 years ago
3
unzip 1-hasm phased_ovlp_to_graph Error

#114 nottwy closed 6 years ago
2
Falcon outputs to Falcon_unzip

#113 Jeff-Liu9453 closed 6 years ago
2
Falcon_unzip can't deal with the HGAP4' output

#112 jun3234 closed 6 years ago
1
unzip uses too much memories

#111 nottwy closed 6 years ago
3
[ERROR]Task Node(3-unzip/0-phasing/000000F) failed with exit-code=1

#110 DuskLi closed 6 years ago
5
ngmlr instead of blasr

#109 mictadlo closed 6 years ago
2
Arrow support

#108 mictadlo opened 6 years ago
0
running test data error on first command

#107 rob123king closed 6 years ago
1
How to install?

#106 Wildish-LBL closed 6 years ago
1
LA4Falcon faild.

#105 WenchaoLin closed 6 years ago
2
'Empty read_set. Maybe empty {!}?'.format(map_fn)

#104 fbemm closed 6 years ago
2
Grid options for het_call

#103 olekto closed 6 years ago
8
ERROR - Task Node(3-unzip/reads) failed with exit-code=256

#102 agroppi closed 6 years ago
3
fc_quiver and phasing

#101 a-velt closed 6 years ago
4
Falcon Unzip with Assembly fasta as input

#100 ian15brown opened 7 years ago
1
Is it right to have track_reads_done.exit and OSError in all.log?

#99 lamz138138 closed 7 years ago
1
Task Node(3-unzip/0-phasing/000010F/blasr) failed with exit-code=256

#98 yanboANU closed 6 years ago
10
falcon_erro

#97 fanyucai1 closed 6 years ago
0
a question on FALCON_unzip primary and haplotigs explaination

#96 wsuplantpathology closed 6 years ago
4
Update README.md

#95 mhsieh closed 7 years ago
0
how to generate _reads.fa file under the directory '3-unzip/reads' manually?

#94 nottwy closed 7 years ago
0
unzip (installed on 20170823) failed at the task 0-phasing/012822F/blasr/task.json

#93 nottwy closed 6 years ago
13
unzip 1-hasm complains of missing edge

#92 jasmynp closed 6 years ago
9
falcon unzip qsub has no -P parameter when 3-unzip/1-hasm/rid-to-phase-all,so the job is still queue

#91 orangeSi closed 7 years ago
0
Falcon Unzip Concurrents are not working

#90 AfterRain closed 6 years ago
4
FC_Quiver Unable to remove heartbeat

#89 AfterRain closed 6 years ago
0
FC_Quiver Fail to open file

#88 AfterRain closed 7 years ago
1
The difference between unzip.py and the output shell command in 0-phasing/blasr

#87 jiabeiphy closed 7 years ago
1
Why the outputs of falcon_unzip is shorter than the falcon's outputs ?

#86 myshu2017-03-14 opened 7 years ago
0
falcon_uznip input BAM?

#85 shilpagarg opened 7 years ago
0
where to find falcon_unzip fc_unzip.cfg example ?

#84 orangeSi closed 7 years ago
0
Problem with HDF5 and downloaded binary

#83 pb-cdunn closed 7 years ago
4
I start from corrected reads, but unzip doesn't work

#82 jamescjc123 closed 6 years ago
4
Falcon Unzip crashed at 0-phasing (blasr ?)

#81 agroppi opened 7 years ago
6
Question about FALCON_UNZIP tracing back the reads

#80 bostanict opened 7 years ago
2
Quiver question regarding arrow algorithm

#79 wyim-pgl opened 7 years ago
0
LD_LIBRARY_PATH is resetting

#78 wyim-pgl closed 7 years ago
5
falcon_unzip breaks down when running blasr

#77 yilunhuangyue opened 7 years ago
2
Are all the haplotigs in one contig correctly phased?

#76 bostanict opened 7 years ago
2
consensus-calling with arrow for contigs absent from all_p_ctg.fa but present in p_ctg.fa

#75 sjin09 opened 7 years ago
1
Configuring to run with SLURM

#74 graffico opened 7 years ago
1
FALCON_unzip successful with Ecoli sample, but failed with my own data

#73 wsuplantpathology opened 7 years ago
4
steps for install and running FALCON_unzip

#72 wsuplantpathology closed 7 years ago
8
input_bam.fofn contents

#71 wyim-pgl closed 6 years ago
15

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