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PacificBiosciences
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FALCON_unzip
Making diploid assembly becomes common practice for genomic study
BSD 3-Clause Clear License
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location of Haplotigs on Primary contigs and read alignment to both
#70
conte1
opened
7 years ago
2
Best way to quantify / check the changes unzip does to the assembly
#69
roblehmann
closed
7 years ago
1
unable to find smrtsuit3.0 for Falcon-unzip
#68
amit4mchiba
closed
7 years ago
1
updated falcon-unzip not reading cfg file correctly
#67
mahulchak
closed
7 years ago
4
fc_quiver.py does not get past quiver_scatter
#66
kevlim83
closed
7 years ago
10
fail to open a sam file
#65
IEkAdN
opened
7 years ago
3
all_p_ctg.fa file with empty sequences
#64
kevlim83
opened
7 years ago
0
falcon_kit.mains.rr_ctg_track causing a lot of paging
#63
msc51
closed
7 years ago
1
falcon_unzip error using ./unzip.sh
#62
shilpagarg
closed
7 years ago
18
getting errors in run_quiver.py step in falcon_unzip
#61
bostanict
closed
7 years ago
8
Proposed fix for cigarString issues
#60
mhsieh
closed
7 years ago
1
Avoid long ref_seq string in parameters for falcon_unzip.phasing.make_het_call
#59
pb-cdunn
closed
7 years ago
0
FALCON_unzip reverts to job_type=local
#58
roblehmann
closed
7 years ago
2
Problem to run last version of falcon-unzip
#57
a-velt
closed
7 years ago
28
python -m not finding function for get_read_ctg_map
#56
YourePrettyGood
closed
7 years ago
7
samtobed.py - unforgiving license terms
#55
0xaf1f
closed
7 years ago
2
Choose unzip_concurrent_jobs and quiver_concurrent_jobs parameters.
#54
a-velt
closed
7 years ago
5
Resuming falcon_unzip from specific step
#53
bostanict
opened
7 years ago
5
blasr 5.3.56ec927 with current FALCON_UNZIP fails in quiver: "read group ID not found"
#52
roblehmann
closed
7 years ago
8
Running falcon_unzip error: "[ERROR]Contents of '/data1/ls2017/falcon/tests/unzip/run1119/./3-unzip/0-phasing/000000F/p_000000F.sh.log':"
#51
ls2017
closed
8 years ago
6
20161111|121503| 46693| ERROR: mummer and/or mgaps returned non-zero
#50
danshu
closed
8 years ago
1
Running falcon_unzip error: "ImportError: No module named falcon_kit"
#49
ls2017
closed
8 years ago
2
[E::hts_open_format] fail to open file '../4-quiver/reads/000011F_036.sam
#48
danshu
closed
8 years ago
7
Falcon Unzip documentation
#47
yingzhang121
closed
8 years ago
1
from: can't read /var/mail/falcon_unzip.ovlp_filter_with_phase
#46
danshu
closed
8 years ago
7
Binary package for Bioconda
#45
mictadlo
opened
8 years ago
1
Failed to recurse into submodule path 'FALCON'
#44
mictadlo
closed
8 years ago
8
fatal: unable to checkout working tree
#43
mictadlo
closed
8 years ago
4
Empty FALCON folder
#42
mictadlo
closed
8 years ago
3
Compatibility question
#41
mahulchak
closed
8 years ago
6
FileNotExistError: "No such file:'/data/falcon/0-rawreads/raw_reads.db' on '......'"
#40
danshu
closed
8 years ago
6
Assembling telomeres
#39
KSchnee
opened
8 years ago
0
Sharing scripts for generating Figure3 in FALCON-Unzip preprint.
#38
JinfengChen
closed
8 years ago
6
task "hasm.sh-hasm-hasm" took very long time
#37
ghost
closed
8 years ago
3
How to run SMRT-analysis?
#36
ls2017
closed
8 years ago
5
Version question
#35
ebioman
closed
8 years ago
2
Possible mummer issue during hasm.sh
#34
peterdfields
closed
7 years ago
28
use falcon-unzip for tetraploid
#33
tangerzhang
opened
8 years ago
1
missing primary contigs after cns
#32
skingan
closed
8 years ago
2
Quiver step failing since it can not find some files to delete
#31
ghost
closed
8 years ago
11
BAM file necessary for quiver step?
#30
ghost
closed
8 years ago
2
blasr 5.2 fundamentally incompatible with current FALCON_UNZIP?
#29
ghost
opened
8 years ago
27
task_hasm() dies on missing ctgs
#28
flowers9
closed
8 years ago
2
wait_for_file and nfs file systems
#27
flowers9
closed
7 years ago
1
poor shutdown/restart handling with partially written files
#26
flowers9
opened
8 years ago
1
Most files empty in 3-unzip directory
#25
peterdfields
closed
8 years ago
23
SMRT Analysis v3 download info no longer works
#24
peterdfields
closed
8 years ago
2
S
#23
peterdfields
closed
8 years ago
0
General refactoring
#22
pb-jchin
closed
8 years ago
0
falcon_unzip and fc_unzip.cfg
#21
danshu
closed
8 years ago
3
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