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Hi,
First of all, thanks for developing this very useful tool!
I have been trying to deploy the algorithm to some 2P recordings from hippocampal astrocytes (I was hoping that your pretrained mod…
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Where do you find what the valid values are to use with the argument `cell.types.use` in the function `xCellAnalysis()`.
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Hello, I have a question. I used your code to run the Full FOV delay map, as showed in Fig. 6c, and obtained delay curves for different times, but their baselines are significantly different, graduall…
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# Brown Univ. Introduction to Bioconductor 2018, Period 1
## A comment on how to use the notebook
It is probably best to "clear" all cells at first. We will go through text, look
at the code…
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Jorstad, Nikolas L., Jennie Close, Nelson Johansen, Anna Marie Yanny, Eliza R. Barkan, Kyle J. Travaglini, Darren Bertagnolli, et al. 2023. “Transcriptomic Cytoarchitecture Reveals Principles of Human…
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Please check that the term does not already exist by using the ontology search tool OLS:
https://www.ebi.ac.uk/ols4/ontologies/cl
I was having a look at this paper [PMID:37824655](https://pubmed.n…
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Here's an idea for a much faster alternative to leiden clustering:
How can we tell if a group should be merged with a neighbor or not? I think the key pattern is that groups that don't deserve to b…
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### Describe the issue:
Hello,
I've found that running the same exact data through kilosort3 results in different outputs each time the algorithm is run. I've skimmed through the code base looking…
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Hi,
I'm running into an issue displaying a dotplot with my data. According to the error message there are duplicate rownames in my data. However, when check for it my rownames (barcodes as well as fe…
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Hi,
I am trying to identify differentially expressed genes between two cell identities using DESeq2:
`markers.astro