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Nanostring-Biostats
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FastReseg
FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.
https://nanostring-biostats.github.io/FastReseg/
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Segmentation Fault
#31
GBeattie
opened
1 month ago
0
Some questions about FastReseg for CosMX data
#30
Jwong684
opened
2 months ago
0
change to cran style and add page site
#29
lidanwu
closed
3 months ago
1
Cmd fix
#28
lidanwu
closed
4 months ago
3
added specifications, requirements and fixed typos in mans
#27
lidanwu
closed
5 months ago
1
fix error for non-smi input and update vignette
#26
lidanwu
closed
1 year ago
0
change lrtest score name
#25
lidanwu
closed
1 year ago
0
memory clean up
#24
lidanwu
closed
1 year ago
0
parallel computation for pipeline wrappers
#23
lidanwu
closed
1 year ago
0
update Description
#22
lidanwu
closed
1 year ago
0
fix datatype
#21
lidanwu
closed
1 year ago
0
modularization and tutorial
#20
lidanwu
closed
1 year ago
1
prepping FastReseg for handoff to software
#19
patrickjdanaher
closed
3 months ago
3
cell typing using negative binomial and f-test pvalue for error detection
#18
lidanwu
opened
1 year ago
5
how do we put fastreseg results back into the pipeline?
#17
patrickjdanaher
opened
2 years ago
1
likelihood calcualtion tLLRv2
#16
dan11mcguire
opened
2 years ago
5
Investigate fastLM to speed up module
#15
davidpross
opened
2 years ago
1
create mask or polygons of cells for FastReseg outputs
#14
lidanwu
opened
2 years ago
0
Iss12 ctrl genes
#13
lidanwu
closed
2 years ago
0
segment of missing genes in reference profiles
#12
lidanwu
closed
3 months ago
3
prepSMI_for_fastReseg failure on slides with low number of FOVs
#11
mtgregory
closed
2 years ago
1
Iss8 dbscan for transcript group, geometry calculation for merging check
#10
lidanwu
closed
2 years ago
2
faster replacement for leiden clustering
#9
patrickjdanaher
closed
3 months ago
3
speeding up slow steps
#8
patrickjdanaher
closed
3 months ago
1
suggested workflow and code organization
#7
patrickjdanaher
closed
3 months ago
1
Workflows using only parts of the FastReseg pipeline
#6
patrickjdanaher
closed
3 months ago
2
Remove dependencies on Giotto objects
#5
patrickjdanaher
closed
2 years ago
1
Entry points to FastReseg
#4
patrickjdanaher
closed
3 months ago
1
wrapper for whole pipeline with per FOV file as inputs
#3
lidanwu
closed
2 years ago
2
functions should take plain arguments, not configs
#2
patrickjdanaher
closed
2 years ago
1
wrapper functions
#1
patrickjdanaher
closed
2 years ago
2