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If one runs hyper-parameter optimization with mlrMBO on a cluster and due to the resources limit(memory limit or time limit for example) the scheduling system has to kill the process. In this case, is…
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Hi!
Is it possible and if yes, in which part of batchtools, to set limits of job submission number, rate, etc.
I am a new user and I am trying to get it work on my University's HPC system
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Hi,
is it possible to specify a username for job submission to slurm?
I would like to use different users on the slurm and the system where batchtools is running, but could not find an option for …
sklas updated
5 years ago
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I would like to call `batchMap` + `submitJobs` in a loop to send a bunch of jobs to the cluster. Then, wait for everything to finish. However, I trigger this error:
https://github.com/mllg/batchtoo…
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Hi there -- this should be an easy fix -- it looks like when resources is set with max.concurrent.jobs=N, and the job is run as a SLURM array job, it is not really working as expected, since if you lu…
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I have to specify a directory for `makeRegistry` due to https://github.com/mllg/batchtools/issues/237, but I always get a ` File at path already exists:` error if I try to re-run the `makeRegistry` fu…
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hi there
I see in the templates that there is a log.file parameter, and I would like to specify that (so I can control where the log file exists on the file system, rather than letting batchtools a…
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is there an analogous setting in future::plan for rmpi?
```r
library(parallel)
hello_world
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Docker image for testing: https://hub.docker.com/r/agaveapi/htcondor/
mllg updated
8 months ago
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CRAN + BioC: [](https://gitlab.com/jangorecki/rdeps) [![Imports](https://jangorecki.gitlab.io/rdeps/data.table/Import…