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hi
i have two bed files and would like to get unique and common records between these two such that the overlap is at least 50%.
in the past, i used
`bedmap --echo-map --max --max-element -…
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Hi bedops team,
I have a bed file and chrom sizes file and would like to get the value at each position from this bed file.
Kindly advice.
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bedmap is throwing errors when error checking is enabled and running in non-fast mode, when a fully-nested element is detected. This is the wrong behavior.
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Matt Maurano reports:
I think I may have found a bug with the new automatic use of --faster in bedmap 2.4.27, at least when --ec is on:
$ head /tmp/a.bed /tmp/b.bed
==> /tmp/a.bed /tmp/b.bed
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Hi guys,
I keep stumbling upon this error when trying to compute the weighted mean.
[xxx@node-head1 xxx]$ cat k9_bedmap.o441063
BEDMAP...
May use bedmap --help for more help.
Error: Unkn…
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Hi Shane,
Let's say I have three BED5 files, `A.bed`, `B.bed`, and `C.bed`:
```
$ more A.bed
chr1 10468 10470 setA 0.97
chr1 10470 10472 setA 1
chr1 10483 10485 se…
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I'm trying to build bedops for GNU Guix, but the reliance on in-tree copies of patched tarballs of third-party libraries makes this more difficult than necessary.
Are the patches to these libraries p…
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I'm trying to build using EasyBuild, on a Fedora 23 host.
I see the following error:
```
checking for gcc... gcc
gcc -O2 -march=native -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I/home/adam/.local/easy…
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reported by M.Maurano and A.Reynolds
![screenshot from 2017-07-14 14-35-26](https://user-images.githubusercontent.com/3394262/28231700-b43bf9d2-68a1-11e7-8e17-df0c4b49a697.png)
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bedmap --echo --echo-ref-row-id can produce outputs that are not fully sorted (at columns 4+) in cases where the first 3 fields are identical, even with fully sorted inputs.
Example:
> cat f1.bed
…