-
Hey there.
Opening a new discussion about the status of this project.
When speaking with other peoples around, we're all using this module but all having our own forks that we maintain and update, m…
-
Hi all,
Once you dig out from under the holiday emails, need to start working on this request. Long story short, Stephen would like us to deliver some of the COVID WGS data to collaborators at NIAI…
-
Package the toil-vg pipeline into a docker container for submission to Dockstore.
-
from @TJoshMeyer
-
- switch modules to containers (#42)
- remove any biowulf-specific code from driver script
- remove hard-coded biowulf paths from config, or document them well
- test on FRCE to verify that it work…
-
### Description of the bug
For example: When using data from **CCBR1187** (Legacy version output:`/data/CCBR/projects/ccbr1187/ChIPseq_Pipeliner_220803`), CHAMPAGNE version 0.2.0 is producing conside…
-
let's turn this into a python package and install it in the shared conda env on biowulf
-
Hey,
When I try to run the [demo using Snakemake rules,](https://github.com/wir963/HATCHet-demo) I get two errors.
The first error is for `count_alleles` and it basically complains that the ph…
-
I am running `hifiasm` of ~1.4GB genome using both the ONT and PacBio HiFi data. The program is stuck at `[M::ha_pt_gen::21255.245*7.18] ==> indexed 5753798835 positions, counted 251767750 distinct mi…
-
NCLscan depends on novoalign from novocraft. Novocraft's software are not Free/Libre Open Source; they require purchasing a license for v4 and for parallel processing with v3.
Biowulf has such a li…