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I was wondering if it makes sense / is straight-forward to use blobtools2 to decontaminate de novo transcriptomes. If so, are there any recommendations that differ from the approaches used for genomes…
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I have a group of people trying to run BTK. We've created a BlobDir, added coverage and BUSCO data (no blast for now) and are trying to host the viewer.
We run: `blobtools host --api-port 8002 --po…
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Hi,
I have been using FCS-gx to screen a large number of fungal genomic assemblies for contaminant organisms. My target organisms are all Pezizomycetes (class of ascomycete fungi), but in addition …
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Hi,
would it be possible to create a proper packaged release, i.e. add a pyproject.toml and setup.cfg? (cf. https://packaging.python.org/tutorials/packaging-projects/ ) It does not necessarily have…
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Hi, How can I get a table of results without having to open the viewer. I ran the blobtoolkit2 and have results, all of them are .json files. I was wondering if there is a quick command line way to se…
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Hi, I came across blobology in MetaWrap workflow and it is good.
I like MetaWrap and don't typically use blobology standalone because it does not have a conda install that many researchers use.
…
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Hi,
I had a lot of issues trying to get a container to run on my cluster and I'd previously been able to just put together datasets piecemeal, but now that I have larger genomes that could make use…
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I produced a covplot for my data and it shows 51.57% unmapped reads. This number does not match the mapped reads info from my .cov or .json. Are these supposed to be congruent? I was expecting the no-…
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Hello,
I first wanted to thank you again for the software.
My goal is to **characterize the metagenome** of three lichens. I created my BlobDirs, I grouped my contigs into bins and I visualised …
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Hello
Can you please add an option to the nodesdb tools to redirect the output nodesDB.txt in an another place ?
It's for continue to use the tools even if we can't write inside the /usr directory…